Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03290 ATGGCGAAATTGAAGATTGCTGGGACATGGACAGGTGTATTAGAAGAAGTCAATTTAGAGAATTGGACGATATCTTGTTTACGTGAAGAAGTTGCTAAACGATCAAATTGTGAAAACCCTCACTTCATCAACCTCATATGTGCCGGTAGAATTCTCAAAGACGACGACCACAATGGAACCCTAACTTTGTCTCAATTGGGTGTCAAAAATAACTCCAAGATTCTCACTACTCTCTCTTCTCCTCAACAGGGTCAATCCCTTGTTCTCGAAGAACAAACCTCTCAAAGGCTTGCACGTATTAGGGCTGCTGCGACTGCATTGGCCGAACGGCATGCGGATGGTTCATTACCCCTGGAAGACTTTAACATAGAAGTTGAAGATCAAAGTGGACAGAAAGTACGCCTAGGATCAGAGACTGATCAGAGGGCGGTAATGATGGGACTGATGCTTCATGCAAAGGGAAAGCATCTTATCAAAGGAGGAAATTACAAAGATGCACTTGAAGTGCTTACCATGGGAGAGGAGTCATTCTCTATTTGTGATCCTAAAGTCATTGAGCTTATTGACAATGTTCCAATACTGCAAATTGACATGGTATGGTGCTACTTTATGCTACGAGACATTAGATGGTTATCAGATGCAGGGAAGCGCCTTGAAATGGCTAGGGCAGGAATTGAACGTGCTCATGGGAAGGATTCTCTCCGCCTTAGACTCTTGCAAGGTGGTCGCTATCCGGAAGTTGCATTGCATTTGAGACTAGAGCTGCTTGAAGGGGTGGTGGCATTTCATACTGGTCAGTTGGAAAAATCTAGGCAAGCTTTAGCTTCTGCAAGAGCAAAGTTTGTTCAGCTGCAAGTGCCAGATGAAGCCTTATCACTTGTTATGAGCATGGGCTACAATCAACGTAATGCAAAGAGAGCGTTGCGAATGAACAATCAAGATGTTGGGGGAGCAATTGATTTCCTTGCTGAGGAGAAGGCAAAGAAAATGCAGAAAAGGGAGGAAGATTTAAAAAGGAGAGATGAAATCTGGGAGCAAAAGCAGTATGGGGTGACCCCCTTAAAGAAGGCCGTGGATCTGGAGAGACTGAAGGAATTGGTCACTATTGGATTTGAGAAGGAGCTTGCTGCTGAAGCCCTTAGAAGAAATGAAAATGATACTCAGAAGGCATTGGATGATTTGACGAATCCAGAAACTAATTCTGATTTACAGGTTAAGATCGAGTCAAGGAAAAGGAAAAGAGAGAAAAAAGCAAAAGACTCTGCAATTGAAAAAGTTGTGCAAATGGGTTTTGAAAGATCAAGAGTGGTAGCTGCTTTTGAGGAAGGCGGCAATTTAGAAGAGGTATTGCAAAGACTGACAGCGCAACCATTGGCGGAAAATATGCAACCCCAAGTGAATTCAACTGCAGCTTCCGATGGTAGTGGAAGTTCATCATCTAACCCTTTACCAGAAACTGTTAGTTCTGATATTCAAGACCTAGTGAATGAGGTTGAAGATCACAATAAAATAGACGAAAGGGATGTGGAGATGGAAGATGAGCTTTCCGCAGATATAGCTAACGGAGATGCCTTTACTGATTATGATATTGAAGTTAATATTGAAGGGGATGCCATAACTGAGTACCTGTCTATGATTGAGACAGTAGCAGGGATTACTTCCAAATAA 1668 0.4263 MAKLKIAGTWTGVLEEVNLENWTISCLREEVAKRSNCENPHFINLICAGRILKDDDHNGTLTLSQLGVKNNSKILTTLSSPQQGQSLVLEEQTSQRLARIRAAATALAERHADGSLPLEDFNIEVEDQSGQKVRLGSETDQRAVMMGLMLHAKGKHLIKGGNYKDALEVLTMGEESFSICDPKVIELIDNVPILQIDMVWCYFMLRDIRWLSDAGKRLEMARAGIERAHGKDSLRLRLLQGGRYPEVALHLRLELLEGVVAFHTGQLEKSRQALASARAKFVQLQVPDEALSLVMSMGYNQRNAKRALRMNNQDVGGAIDFLAEEKAKKMQKREEDLKRRDEIWEQKQYGVTPLKKAVDLERLKELVTIGFEKELAAEALRRNENDTQKALDDLTNPETNSDLQVKIESRKRKREKKAKDSAIEKVVQMGFERSRVVAAFEEGGNLEEVLQRLTAQPLAENMQPQVNSTAASDGSGSSSSNPLPETVSSDIQDLVNEVEDHNKIDERDVEMEDELSADIANGDAFTDYDIEVNIEGDAITEYLSMIETVAGITSK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03290 555 MobiDBLite consensus disorder prediction 388 422 - -
Trre3g03290 555 Gene3D - 11 86 - -
Trre3g03290 555 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 285 325 IPR015940 -
Trre3g03290 555 SUPERFAMILY UBA-like 355 399 IPR009060 GO:0005515
Trre3g03290 555 Gene3D - 360 397 - -
Trre3g03290 555 Gene3D - 287 326 - -
Trre3g03290 555 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 357 397 IPR015940 -
Trre3g03290 555 Coils Coil 327 347 - -
Trre3g03290 555 MobiDBLite consensus disorder prediction 404 422 - -
Trre3g03290 555 SUPERFAMILY UBA-like 260 324 IPR009060 GO:0005515
Trre3g03290 555 CDD UBA 363 392 - -
Trre3g03290 555 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 2 549 IPR039749 -
Trre3g03290 555 SMART uba_6 287 324 IPR015940 -
Trre3g03290 555 SMART uba_6 419 455 IPR015940 -
Trre3g03290 555 SMART uba_6 359 396 IPR015940 -
Trre3g03290 555 MobiDBLite consensus disorder prediction 464 489 - -
Trre3g03290 555 SUPERFAMILY Ubiquitin-like 20 77 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03290 Trre-Chr3 41149812 41154645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03290 - - gmx:100792972 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03290 3 41149812 41154645 Trre3g03290 3 41149812 41154645 ECH