Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02912 ATGTTGGAAGAAGAAAGCGAGAAGAGAGCAGTGAGAATATTCGTTGGAGGAATAGGTGAAGCTGTTACTGCCGATGACATTCGCCAGCTTTTTGAATCATTGGGAACCGTTCAATCACTCGAAACCATTCGAACCAAAGGTCGTAGTCAAGCTTACCTCGACTTTCTCTCTGATCCTAAATCCCTTTCAATACTTTTCAGCAAGTATAATGGGTGTGTATGGAAAGGTGGAAAACTGAGACTTGAAAAGGCTAAAGAGCATTACCTTGATCGTTTGAAAAAAGAATGGGAACAAAATGCAATTCTTAGTAGAAAACTGCCAGCTACTGATCTTTCAACTCAAAAGGAGGATTTGGAAAAGCCTAATTCGAAACGCATTTTGGATTCAAATGCAAAGGCTCTCAATATTTTCTTCCCAAGATTAAGAACGGTGAAATCTGTACCATTCAGTGGAACAGGCAAGCACAAATACAGTTTCCAGAATATTAAAGTTCCTCCTCTCCCTGTGCATTTTTGTGACTGTGAGGAACATTGTAGTCCTTTTATCACAAATAGGGAAAAGTTATCCATGAATGTGGAAGCAGAAAATGGGGGAATAAATGATGAAGAAATTAAAATAATGAATGCTGTGATGAACAGGCTTTTTGAAAAAGAAAAGGTTTCCAACACCAGGCATCATGGAAATAAGCATGATTCTTTTGAATCTCCTGATGCTTTACATTCTAATGAACGTGAAGTAGATAGTGCACCAGATGATGATGATGATGAGGAGGAGGATGATGATGATGATCGTCTCATAATCAACATAGCAACGAAGAAAAATAAAGCAGGTTTAACGGGGACCCAAGAACTTGAAAAGATCATGGAAAATCAGGAATGGTTCAAGAAAGCAAATATTGCAGAGGAAGAACCCATTGAAATGCATAAAAGGAGTAACAGCAATACTAACAAGGTCAAGAAGAGAAAAACACTTCCCAAATCGGAAAACAATGAGGGTGTGTCGAGAACCACTGTTGGCAATAGTAGAATGCAGACCCATCTAGATAAGCTGGGCTCTGGTGCACAGCCTACTGAACCAGGATATGATTTTGCGGAATCAGCTAAAGTTTCATGGTCTCAGAAGTCTTCATGGAAAGAACTTGTTGGGAAAGGTGGCAATGCTGCCTTCAGTGCCTCTCTCATATTACCAAAGTTTGATTCTGGTAAAGATGAACAAAATTCTGACAGTTCTTGCACATCTTCATCTACAAACGATGAAACTGAAGACACGGTTGAAGATGAAACTGAAGACACGGTTGAAGATGAAACTGAAGACACGGAAAGTGATGAATATCAAGAGAGCAAACCTACCAATGGACAAGTGATAGAAGAGCCTAATGAATCTCTACCTACCAATACACCAATGATGGAAGAACCTGCTGAAGCTCAACCTAACAATAAACAAGTGATAACTGAACCTGCCGAAACTCAGCATAACACGGCACCAAAAATAACCAGCAGAGGTGCTTCGTGGTTGAAAAAGAAATCCTGGATCCAACTGGTTAATGAGAATAACAATTCGTTTAGCATTTCACAAATTTTGCCTGGCATTACTTTCCCAGAACAAACAACCAAGGAACCCATTTTGTACCCTACCAATTCCAATGATTACAAGCATAATGGTGCTGATAAGAATACTGTCAATGGAACTATCATTAATGGATTCAATGCCGTTGCTGTTGATATAGTTTCTGCTCCAGTAGTCGAGAAAACAGTTGAAACAAGTCCAACGGATAAATCCTGTGCAAATGTTGAAATAGGAAAAACTTGCTCATTTATGAGAAATGCTGCTTCTTTGAAAGAGTGGGCAAAAGCTAAAGCTTCTGTTAGTGGATCACTCAAAAGAAAACACGGTGAGAAGTAA 1902 0.3927 MLEEESEKRAVRIFVGGIGEAVTADDIRQLFESLGTVQSLETIRTKGRSQAYLDFLSDPKSLSILFSKYNGCVWKGGKLRLEKAKEHYLDRLKKEWEQNAILSRKLPATDLSTQKEDLEKPNSKRILDSNAKALNIFFPRLRTVKSVPFSGTGKHKYSFQNIKVPPLPVHFCDCEEHCSPFITNREKLSMNVEAENGGINDEEIKIMNAVMNRLFEKEKVSNTRHHGNKHDSFESPDALHSNEREVDSAPDDDDDEEEDDDDDRLIINIATKKNKAGLTGTQELEKIMENQEWFKKANIAEEEPIEMHKRSNSNTNKVKKRKTLPKSENNEGVSRTTVGNSRMQTHLDKLGSGAQPTEPGYDFAESAKVSWSQKSSWKELVGKGGNAAFSASLILPKFDSGKDEQNSDSSCTSSSTNDETEDTVEDETEDTVEDETEDTESDEYQESKPTNGQVIEEPNESLPTNTPMMEEPAEAQPNNKQVITEPAETQHNTAPKITSRGASWLKKKSWIQLVNENNNSFSISQILPGITFPEQTTKEPILYPTNSNDYKHNGADKNTVNGTIINGFNAVAVDIVSAPVVEKTVETSPTDKSCANVEIGKTCSFMRNAASLKEWAKAKASVSGSLKRKHGEK 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02912 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 86 IPR000504 GO:0003723
Trre3g02912 633 MobiDBLite consensus disorder prediction 329 351 - -
Trre3g02912 633 CDD RRM_NOL8 12 85 IPR034138 -
Trre3g02912 633 MobiDBLite consensus disorder prediction 419 442 - -
Trre3g02912 633 MobiDBLite consensus disorder prediction 304 377 - -
Trre3g02912 633 MobiDBLite consensus disorder prediction 446 466 - -
Trre3g02912 633 SMART rrm1_1 12 82 IPR000504 GO:0003723
Trre3g02912 633 MobiDBLite consensus disorder prediction 399 478 - -
Trre3g02912 633 MobiDBLite consensus disorder prediction 248 264 - -
Trre3g02912 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 54 IPR000504 GO:0003723
Trre3g02912 633 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Trre3g02912 633 Gene3D - 2 89 IPR012677 -
Trre3g02912 633 MobiDBLite consensus disorder prediction 220 247 - -
Trre3g02912 633 PANTHER TRANSCRIPTIONAL REGULATOR 4 632 - -
Trre3g02912 633 MobiDBLite consensus disorder prediction 220 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02912 Trre-Chr3 34784446 34789931 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02912 - - tpra:123883670 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02912 3 34784446 34789931 Trre3g02912 3 34784446 34789931 ECH