Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02896 ATGACTGACGGTGAAAACAGTGCAGTATCTAGATCTCCTCATTTTCTAGCTAGGGCACAAGGTTCTGGAACTTTCTGTGAATTGAAATGGAAGTTCCGCTCGGTTACAAAGAAATCAGGTTCGGGTGGTGGTTCTGTTAGTTCAGTGCCCAGACGGAACAGTACTGGAGGGTTAGCGCAACGGTCTTTGTTATCATCGGATGGAAAAAATAAAACTGCTGTTAATGCTAAAACCGTTTCTTCAAATTCAAATTCAAATTCTTCGGTTACTGGATCTCTTCGGAGATCTCTCCCAGAGATTCGCCGGAGTTCGATTTCTGCTTTGCATGCTGGGAAGCCTGTTGCCGGTTCGCCGGTCGGTTCTGGATTGAGGACATCTGCCGTGTTTGGTTCGAGTTCGAGTAAGACGGAAGCTGTTAAGAGGCCGTTGAATAAGCCGGCATTGTCAGTTTCTGCTTCTTCTTCGTCGAGGAGGGATAGAGTTGGTTCTTCCACGGTGGATGGTAGTGGCGGCAGTACTGGTGGTTCTGTTAGGAAGACTGTGGCGAAGGTTTTGTCTCCGTCGGCACGGTCACCGTCTTTGTCTAGTGGGTTGAGAGCAGGGTTGTCTTTGTCATCGTCTTCTGATAGAAGTTCTGGTTTGTCTGGGAGGAGGAAAGTGGCAACTCCTGATAGCCGTAATTCGCGGTTTATTGTTCTTCCTCAGATTGAGGTTAAGGCTAGTGATGATTTGAGATTGGATCTTAGGGGACACAGAGTTCGTAGTCTCACTGCCAGTGGATTAAACTTATCCTCAAACTTGGAGTTTGTTTATCTCCGAGATAATCTATTGTCTACATTGGAAGGAGTAGAAATATTGACAAGAGTGAAGGTTCTTGATTTGAGCTTTAATGATTTTAAAGGGCCTGAATTTGAGCCTCTTGAAAATTGCAAAGTACTGCAGCAACTCTATCTTGCTGGAAATCAAATCACATCATTGGCAAGTCTCCCACAACTTCCTAATTTGGAGTTCCTTTCTGTAGCTCAAAATAAGTTGAAATCTCTCACAATGGCAAGTCAACCTCGCCTCCAGGTCTTAGCTGCCAGCAAAAACAGAATTTCTACACTAAAGGGTTTTCCATATTTACCTGTTCTTGAGCATTTGCGAGTGGAGGAGAACCCTATACTGAAGATGCCTCATTTAGAAGCAGCCTCAATATTGCTAGTTGGGCCTACTTTAAAAAAATATAATGATAGAGATCTTTCTCGCGAGGAAATGGCAATAGCAAGGCGATATCCTGCACATACAGCTTTGTGCATTAGAGATGGTTGGGAGTTTGGTTGTCCTGAGCATGTTGCAGAGTCAACTTTTCGCTTTCTTGTTGAGAAATGGCAGGACCACATTCCACCTGGTTTTTTTCTCAAAGAAGCCTCAATAGATAAACCTTTGGAAGAAGATGTGTGCCGCTGTCATTTCACATTTGTTCATGATGGTGCAATGAGTACAGACCCACCGTTAGTCTTAAAATATCAATGGTTTTGTGGTGATTTAAGTCTTTCAAATTTTATCCCTATTCAAGATGCAACTGATGAGTTTTACTTGCCAAAACATGATGAGATTGGAAAAATTCTGAAAGTGGAATGTACTCCCACATTAGGAGAGACAAAATATCCTTCTATATTTGCCATTTCTTCCCGTGTTAAACCAGGGAGTGGAATTCCAAAGGTTTTAAACCTTGAAGTCCGTGGGGAATTGATAGAAGGAAGTATCATCCGGGGTGTTGCTAAGATTGCATGGTGTGGTGGGACTCCAGGAAAAGGTGTTTCTAGTTGGCTGCGGAGAAAGTGGAACAGTAGTCCTGTGGTCATTCTTGGGGAAGAAGATGATGAGTATCAGCCAACCATTGATGATGTTGATTCAAGTTTAGTTTTCATGTACACACCAGTAACAGAAGAAGGTGCCAAAGGAGAACCTCAATATAAATATACGGATTTTGTAAGAGCTGCTCCGCCTTCAGTCAGTAATGTTAGAATAGTTGGAGATGCTGTTGAAGGAATAACCATTAAAGGAGTTGGTGATTATTTTGGTGGACGGGAGGGACCTAGCAAGTTTGAATGGCTACGAAAGAACAGAGATACTGGAGACTTTCTGTTAGTGTCAGCTGGTACATCTGATTATACCTTGACCAAAGACGATGTTGGTTGTTGTTTGACTTTTGTATACATACCAATTAATTTTGAAGGTCAGGAAGGAAAATCATTGTCAGCAATGTCTCCTGTTGTAACACAAGCCCCACCAAAAGTAACGAATGTCAAAATAATCGGGGATCTACGAGAGAATGGAAAAGTCACTGCGACTGGTATTGTAACTGGAGGAACTGAAGGATCTAGTAGAGTTCAGTGGTACAAAACATATTCGTCAACTTTGGATGAAAGCAATCTCGAAGCATTAAGTACTTCTAAAATTGCTAAAGCATTCCGCATTCCTCTTGGAGCTGTTGGCTGTTACATTGTTGCAAAATATACACCAATGACTCCTGATGGTGAATCTGGTGAATCAACATTTGTAATATCTGATAGAGCAGTTGAGACTCTTCCCCCTAGCTTGAATTTCTTATCAATTATTGGAGATTACAGTGAGGATGGAATATTGACAGCTTCATATGGATATGTTGGAGGTCATGAAGGAAAAAGTATATACAATTGGTATATTCATGAGGTTGAAGGTGATTTTGGTTCTCCGATATCAGAGGTTTCTGGACTTCTGCAATATCGTATTACCAAAGAAGCTATTGGAAAATTCATCTCATTCCAATGTACTCCTGTACGTGATGATGGCATTGTGGGCGACAAAAGAATTTGCATGGGCCAGGAGCGCATTCGACCTGGAAGCCCGAGATTGCTTTCTTTACACATAGTTGGAAATGCGGTTGAAGGAACAACACTAAGAATTGAAAAAACGTATTGGGGAGGTGAAGAGGGAGATTCAGTTTACCGCTGGCTTAGGACCAGTTCTGATGGTTTCCAAAGTGAAATTATGGGTGCAACCACAGCATCATATATGCCCTCAATTGATGATATTGGTTTCTTTATTTCTGTTTCTTGTGAGCCTGTCCGGAGTGATTGGGCTCGTGGACCCATTGTTCTCTCTGAACAAATTGGACCTATTATACCTGGTCCGCCAACTTGTCACACTCTAGAAATTCTTGGATCAATGATAGAAGGGCAGCGCTTGAACTTCAATGCTGTGTATAGCGGAGGGGAGAAAGGAGAATGCACCCACGAGTGGTTTAGAGTAAAAGACAATGGTGTTCGAGATAAAATAAGTAGTCAAGGTTTTTTGGATTTGACTCTTGACGATGTTGGCGCCTTCATAGAGCTTGTCTACACACCTGTGTGCAAAGATGGAACCAAAGGCAGCCCAAAGAATGTGGCATCTAATATAATTTCTCCTGCGGATCCTAAGGGAATAGAGCTCAAAATACCAGACTGTTGCGAAGGCAGGCAGGTTACCCCATTGAGAATATATTTTGGTGGACATGAAGGAGTTGGAGAATATATTTGGTACCGGACAAAGATTAAGCTTGAAGGATCTGCACTACTAAATATATCTAGTGCTTCTGACATCGTGATGTGCGGGACAGAGCAAACATATAAACCAACTGTTGAAGATGTTGGATATTTTTTGGCCTTGTATTGGGTACCAACTCGTGTGGATAGCACTTGTGGGGAGCCATTGGTTGCAATTTGCAGCACCCCAGTTTCCCCTGCACCTCCAGTAGTTGCGAACGTACGCGTGAAAGAATTGTCTTTGGGAATCTATTCTGGTGAAGGCGAATATTTTGGTGGATATGAAGGAGAAAGCCTTCTTAGCTGGCACAGAGTAAATGGTGAGGGGATCGTTGAACCGATTACTGGGGCAAATTCTAGAAGCTACACAGTTACTGATTCAGATTACACTTGTCGTTTGTTGTTTGGATATACTCCAGTTCGTTCAGATTCAGTTGTAGGTGAACTCAGGTTATCAGATCCAACTGACATTCTTTTCCCAGAGCTTCCATATGCGGAGATGCTTGCTCTGACAGGAAAGGCAGTTGAAGGTGACATACTTACAGCTGTTGAAGTGATTCCAAATAGGGAGATGCAGCAACATGTCTGGAGCAAGTACAAGAAAGACATAAGATACCAATGGTTTTGTTCATCAGAAGTGGGAGACACTTTTTCATATGAGCCATTACCCAATCAAAATTCTTGCTCCTATAGGGTGCGGTTGGAGGATATTGGCCGTTGTTTGAAATGTGAATGTGTTGTAACTGATGTGTTTGGAAGGTCGAGTGAGGTGGTATACATAGAGACAACGCCTGTATTACCAGGGATTCCTAGAATACACAAGCTTGAGATTGAGGGAAGGGGATTCCATACCAATCTCTATGCTGTTCGTGGCAATTATAGTGGTGGGAAGGAAGGCAAAAGTAGAGTCCAATGGCTTAGATCAATGGTTGGAAGTCCTGATCTGATCTCTATACCAGGAGAAACAGGCAGAATGTATGAAGCAAACGTTGATGATGTAGGCTATAGGTTGGTGGCCATCTACACTCCTGTAAGAGAGGATGGAGTAGAGGGCCAGTCAGTTTCTGTATCCACAGATCCAATTGCAGTTGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAACCTTGACCTGGGATCGGTGAAATTTGAGGTATTGTGTGACAAAGACCAAACTTCGAGAAAGATTTCATCGGTGGGCACATATGAGAGACGAATACTTGAGATTAACAAGAAAAGGGTAAAGGTGGTAAAACCTGCCACCAAGACTTCTTTTCCAACTACAGAAATTCGTGGTAGTTATGCCCCTCCATTTCATGTGGAGCTTTTCAGGAATGATCAACACCGTCTAAAAATAGTAGTGGACAGTGAGAATGAAGCTGACTTGATGGTGCAGTCCCGACACATTCGGGATGTTATCGTTCTTGTGATTAGAGGACTTGCTCAACGATTCAACAGCACTTCCCTCAATTCCCTTCTCAAGATAGAGACATGA 5040 0.4264 MTDGENSAVSRSPHFLARAQGSGTFCELKWKFRSVTKKSGSGGGSVSSVPRRNSTGGLAQRSLLSSDGKNKTAVNAKTVSSNSNSNSSVTGSLRRSLPEIRRSSISALHAGKPVAGSPVGSGLRTSAVFGSSSSKTEAVKRPLNKPALSVSASSSSRRDRVGSSTVDGSGGSTGGSVRKTVAKVLSPSARSPSLSSGLRAGLSLSSSSDRSSGLSGRRKVATPDSRNSRFIVLPQIEVKASDDLRLDLRGHRVRSLTASGLNLSSNLEFVYLRDNLLSTLEGVEILTRVKVLDLSFNDFKGPEFEPLENCKVLQQLYLAGNQITSLASLPQLPNLEFLSVAQNKLKSLTMASQPRLQVLAASKNRISTLKGFPYLPVLEHLRVEENPILKMPHLEAASILLVGPTLKKYNDRDLSREEMAIARRYPAHTALCIRDGWEFGCPEHVAESTFRFLVEKWQDHIPPGFFLKEASIDKPLEEDVCRCHFTFVHDGAMSTDPPLVLKYQWFCGDLSLSNFIPIQDATDEFYLPKHDEIGKILKVECTPTLGETKYPSIFAISSRVKPGSGIPKVLNLEVRGELIEGSIIRGVAKIAWCGGTPGKGVSSWLRRKWNSSPVVILGEEDDEYQPTIDDVDSSLVFMYTPVTEEGAKGEPQYKYTDFVRAAPPSVSNVRIVGDAVEGITIKGVGDYFGGREGPSKFEWLRKNRDTGDFLLVSAGTSDYTLTKDDVGCCLTFVYIPINFEGQEGKSLSAMSPVVTQAPPKVTNVKIIGDLRENGKVTATGIVTGGTEGSSRVQWYKTYSSTLDESNLEALSTSKIAKAFRIPLGAVGCYIVAKYTPMTPDGESGESTFVISDRAVETLPPSLNFLSIIGDYSEDGILTASYGYVGGHEGKSIYNWYIHEVEGDFGSPISEVSGLLQYRITKEAIGKFISFQCTPVRDDGIVGDKRICMGQERIRPGSPRLLSLHIVGNAVEGTTLRIEKTYWGGEEGDSVYRWLRTSSDGFQSEIMGATTASYMPSIDDIGFFISVSCEPVRSDWARGPIVLSEQIGPIIPGPPTCHTLEILGSMIEGQRLNFNAVYSGGEKGECTHEWFRVKDNGVRDKISSQGFLDLTLDDVGAFIELVYTPVCKDGTKGSPKNVASNIISPADPKGIELKIPDCCEGRQVTPLRIYFGGHEGVGEYIWYRTKIKLEGSALLNISSASDIVMCGTEQTYKPTVEDVGYFLALYWVPTRVDSTCGEPLVAICSTPVSPAPPVVANVRVKELSLGIYSGEGEYFGGYEGESLLSWHRVNGEGIVEPITGANSRSYTVTDSDYTCRLLFGYTPVRSDSVVGELRLSDPTDILFPELPYAEMLALTGKAVEGDILTAVEVIPNREMQQHVWSKYKKDIRYQWFCSSEVGDTFSYEPLPNQNSCSYRVRLEDIGRCLKCECVVTDVFGRSSEVVYIETTPVLPGIPRIHKLEIEGRGFHTNLYAVRGNYSGGKEGKSRVQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVAIYTPVREDGVEGQSVSVSTDPIAVEPDVLKEVKQNLDLGSVKFEVLCDKDQTSRKISSVGTYERRILEINKKRVKVVKPATKTSFPTTEIRGSYAPPFHVELFRNDQHRLKIVVDSENEADLMVQSRHIRDVIVLVIRGLAQRFNSTSLNSLLKIET 1679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02896 1679 FunFam 187-kDa microtubule-associated protein AIR9 isoform X2 1346 1441 - -
Trre3g02896 1679 ProSiteProfiles Leucine-rich repeat profile. 312 333 IPR001611 GO:0005515
Trre3g02896 1679 MobiDBLite consensus disorder prediction 147 176 - -
Trre3g02896 1679 MobiDBLite consensus disorder prediction 36 96 - -
Trre3g02896 1679 Gene3D Ribonuclease Inhibitor 302 430 IPR032675 -
Trre3g02896 1679 MobiDBLite consensus disorder prediction 38 96 - -
Trre3g02896 1679 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Trre3g02896 1679 MobiDBLite consensus disorder prediction 186 215 - -
Trre3g02896 1679 PANTHER EXPRESSED PROTEIN 636 745 - -
Trre3g02896 1679 FunFam 187-kDa microtubule-associated protein AIR9 302 430 - -
Trre3g02896 1679 Gene3D - 959 1038 - -
Trre3g02896 1679 Gene3D - 1346 1441 - -
Trre3g02896 1679 SMART LRR_sd22_2 286 309 - -
Trre3g02896 1679 SMART LRR_sd22_2 332 353 - -
Trre3g02896 1679 SMART LRR_sd22_2 264 285 - -
Trre3g02896 1679 SMART LRR_sd22_2 310 331 - -
Trre3g02896 1679 FunFam 187-kDa microtubule-associated protein AIR9 959 1042 - -
Trre3g02896 1679 SUPERFAMILY Outer arm dynein light chain 1 245 399 - -
Trre3g02896 1679 MobiDBLite consensus disorder prediction 128 221 - -
Trre3g02896 1679 Gene3D Ribonuclease Inhibitor 235 301 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02896 Trre-Chr3 33577312 33606759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02896 - - gmx:100807099 2628.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02896 3 33577312 33606759 Trre3g02896 3 33577312 33606759 ECH