Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02793 ATGAGTTTGAAGTATCTGCTGGTTGTTATCTGTCTTTGGATTTGGTCTCAATCTTTGGCTATTTCAATTTCTGATGATGGGTTGATGAGAATTACTCTAAAAAAGAGGAATTTGGATTTTCATAGTGTTAATTCTGCAAAAATCAAAAGGGCAATTCATGGAAAAGATTTAGAGGGTATTGATAAAAATTGCTGCAAAAATGATATAGTATATCTTAAGAATTACTTTGATGTACAATATTTTGGAGAAATTGGTATTGGTTCACCACCACAATACTTCAATGTTGTGTTTGACACTGGAAGTTCTAATCTTTGGGTTCCTTCTTCTAGATGCATCTTCTCAATTGCTTGTTATTTACATTCCAAGTATAGGTCGGGGATATCTACCACCTATAACGAAATTGGAGTACCTTGTGAAATCCCTTATGAAGATGGATACATTTATGGATTCTTCAGCCAAGATAATGTAAAAGTTGGGGATATAATTATCAAAGATCAAGAGTTTTCAGAGATTACAAGGGAAGGAAATTTTGCACTTTTAGCTCTTCCATTTGATGGTATACTTGGACTTGGATTCAAAGATATTTCAGTTGGAAAAGTCACACCAGTTTGGTATAATATGATAGAACAAGGACAAATTTTGGACAAAGTTTTCTCTTTTTGGCTAAATAAGGATCCAATGGCACAAATAGGGGGTGAGATTGTCTTTGGTGGTATGGACACGAGGCATTTTAGAGGTGACCATAGTTACTTTCCAATTTCTCAAAAGGGTTATTGGCAGATTGAAGTAGGAGATATTCTACTTGGAAATAATACAACAGGTTTATGTGAAGGTGGATGTGCTGCAATAGTGGACTCAGGAACATCTTTAATTGCTGGTCCAACGGGTGTTGTGACTCAAATTAATCATGCAATTGGAACACAAGGATATGTTAGTTTTGAATGTAAAAACATTGTCCATAACTATGGAAATTTGATATGGGAAAACTTGATTTCAGGGTTAAATCCTGAAATCTTATGTGATAACATTGGACTATGTTCAGATAATGGATTTCAAAGAATGAATGATGTTATTGAAACAGTGGTGCATAATGAAAGTAGGGATGGATCAGCAAAATGGGAGAGTCCCTTTTGTAGTTTTTGCAATAATATTGTCCTTTGGATTCAAGTTCAGATTAAGCAAAGCAATGTAAAGGAAAAAGTATTAAAACATGTGGATGAGCTTTGTGAGAGGCTCCCGAATCCGGTTGGAGAATCGTTTATAAACTGCAGTAGCATCTCAAGTATGCCACACATTACATTCACAATTGGAAACAAATTGTTTTCACTTTCTCCAGAACAGTATGTTCGTAGAGTTGAATCAGATGACGAAGATTGTTCCCCTGTGTGCTATAGCGGTTTTGTTGCTCTAGATGCGCCTTCACCGCAGGGTCCCCTCTGGGTTGTTGGAGACATTTTCTTGCAGGCATATCATACGGTGTTTGACTATGCCAATCTCCGTATAGGATTTGCAGAATCTACATAA 1524 0.3615 MSLKYLLVVICLWIWSQSLAISISDDGLMRITLKKRNLDFHSVNSAKIKRAIHGKDLEGIDKNCCKNDIVYLKNYFDVQYFGEIGIGSPPQYFNVVFDTGSSNLWVPSSRCIFSIACYLHSKYRSGISTTYNEIGVPCEIPYEDGYIYGFFSQDNVKVGDIIIKDQEFSEITREGNFALLALPFDGILGLGFKDISVGKVTPVWYNMIEQGQILDKVFSFWLNKDPMAQIGGEIVFGGMDTRHFRGDHSYFPISQKGYWQIEVGDILLGNNTTGLCEGGCAAIVDSGTSLIAGPTGVVTQINHAIGTQGYVSFECKNIVHNYGNLIWENLISGLNPEILCDNIGLCSDNGFQRMNDVIETVVHNESRDGSAKWESPFCSFCNNIVLWIQVQIKQSNVKEKVLKHVDELCERLPNPVGESFINCSSISSMPHITFTIGNKLFSLSPEQYVRRVESDDEDCSPVCYSGFVALDAPSPQGPLWVVGDIFLQAYHTVFDYANLRIGFAEST 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02793 507 FunFam Lysosomal aspartic protease 66 308 - -
Trre3g02793 507 ProSiteProfiles Saposin B type domain profile. 374 415 IPR008139 -
Trre3g02793 507 SUPERFAMILY Acid proteases 9 505 IPR021109 -
Trre3g02793 507 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 20 505 IPR001461 GO:0004190|GO:0006508
Trre3g02793 507 Gene3D Acid Proteases 29 238 IPR021109 -
Trre3g02793 507 Gene3D - 310 413 - -
Trre3g02793 507 PRINTS Pepsin (A1) aspartic protease family signature 282 293 IPR001461 GO:0004190|GO:0006508
Trre3g02793 507 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Trre3g02793 507 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190|GO:0006508
Trre3g02793 507 PRINTS Pepsin (A1) aspartic protease family signature 232 245 IPR001461 GO:0004190|GO:0006508
Trre3g02793 507 Gene3D Acid Proteases 239 506 IPR021109 -
Trre3g02793 507 Pfam Saposin-like type B, region 1 376 413 IPR007856 GO:0006629
Trre3g02793 507 Pfam Eukaryotic aspartyl protease 79 505 IPR033121 -
Trre3g02793 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 95 106 IPR001969 GO:0004190|GO:0006508
Trre3g02793 507 ProSiteProfiles Saposin B type domain profile. 310 350 IPR008139 -
Trre3g02793 507 SUPERFAMILY Saposin 312 413 IPR011001 -
Trre3g02793 507 Pfam Saposin-like type B, region 2 314 346 IPR008138 -
Trre3g02793 507 ProSiteProfiles Peptidase family A1 domain profile. 80 504 IPR033121 -
Trre3g02793 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 282 293 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02793 Trre-Chr3 30307160 30311689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02793 K08245 - gmx:100500551 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02793 3 30307160 30311689 Trre3g02793 3 30307160 30311689 ECH