Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02761 ATGTTAGCTTCTTCGCTCTCATTCCTTCATTCTTGCACATTTCCCTCTTCTTCTTCTCCACTCACAATTCCAATTCCAAATCCCAATTCATCTTCTTCATCTTTATCTTTTGTTGTTCAAGCCAAAACCACTACCCGAAGGGAAGACAGAACTGCTCGCCATGTTCGTATCAGAAAGAAGGTTGAAGGAACACCCGAAAGACCAAGATTATCTATCTTCCGATCCAACAAGCATCTCTTTGTCCAGGTGATTGATGACACCAAGATGCATACACTTGCTTCAGCTTCGACAATGCAGAAGGCAATTGCTGAAGAGTTGAACTACACCTCCAGCCCTACAATTGAAGTAGCAAAAAGGGTGGGTGAGATCATTGCAAAATCCTGTCTGGAGAAAGGGATCACAAAGGTAGCATTTGACCGAGGTGGTTACCCATACCATGGCCGTATTAAAGCTATTGCTGACGCGGCTCGCGAACAAGGCCTCGATTTCTAA 492 0.4431 MLASSLSFLHSCTFPSSSSPLTIPIPNPNSSSSSLSFVVQAKTTTRREDRTARHVRIRKKVEGTPERPRLSIFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNYTSSPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRIKAIADAAREQGLDF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02761 163 Gene3D - 44 163 - -
Trre3g02761 163 FunFam 50S ribosomal protein L18 44 163 - -
Trre3g02761 163 CDD Ribosomal_L18_L5e 57 161 - -
Trre3g02761 163 Hamap 50S ribosomal protein L18 [rplR]. 45 163 IPR004389 GO:0003735|GO:0005840|GO:0006412
Trre3g02761 163 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 45 163 IPR005484 GO:0003735|GO:0005840|GO:0006412
Trre3g02761 163 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 41 163 IPR005484 GO:0003735|GO:0005840|GO:0006412
Trre3g02761 163 SUPERFAMILY Translational machinery components 46 161 - -
Trre3g02761 163 NCBIfam 50S ribosomal protein L18 47 163 IPR004389 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02761 Trre-Chr3 29731380 29734452 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02761 K02881 - gmx:100306308 236.884