Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02688 ATGAGAACTTCATCTATTGAGAGGTGCACCACTAGCAAAAACGAATTAGACTTGCCGGAAAATTTCGAAACCGAATCGGAAAAACATGTTTACGGCGCAATGTTGCCGGTTTTTCTCAACGATCTCCGTAGTAATCACCACAAGGAGCTCGTTGAGATTACATTAGAGCTCGAAGATAACGCTGTCGTGCTACGTAACATCGCTTCCGCTCCAAACGCGTCTCCGTCTTCAAGTCATGCAACTGGAGATGAAACTACGGTCGGGCTATCGAGGAGTCTTTCAATTGCATCAAGGATACGGAAGAAGTTTCCGTGGCTGAGGTCGTTGTCTTTGCAGACATCGACCTCGTCCTCGGAGAGTGTTACGGCAGCCGTGGAGGATCCGATGATGGCGCGGAATGCACGGAGAATGCGAGCGGAGCTTGAACGGACGAGATCGAGTGCTCAAAGAGGTTTGAAAGGCTTGAGATTTATTAGTAAGTCGGGTGAAGCATCTGAGGAGTTGTGGAGAAAAGTTGAAAAGAGGTTTGGATTTCTTGCTAAAGATGGTTTGCTAGATAGAGAAGAATTTGGTGAATGCATTGGAATGGAGGATTCAAAGGAATTTGCGGTTGGTATATTTGATGCATTAGCAAGAAGGAAGGAAAAAAAAGAAGTGTGCAAGATAACGAAAGAAGAACTGCGTCAGTTTTGGTTGCAAATTTCAAACCAGAGTTTTGATGCACGTCTTCAAATTTTCTTTGACATGGCAGACAGTAATGAAGATGGAAGGATTACTAGAGAAGAAGTACAAGAGCTTATAATGCTAAGTGCTTCTGCAAACAACCTATCGAAGCTAAAAGAACAAGCTGAAGGGTACGCTGCATTAATAATGGAAGAATTGGATCCTGAAAACCTTGGTTATATCGAGCTGTGGCAGCTAGAAATGTTACTACTAGAAAAAGACAGATACATGACATATAGTAGGCAACACAGCAGTGCAAGTGTAAACTGGAGTCAAAATCTGACAAGTTTAAGACCCAAAAATAAAATCCAAAAAATCCTCAAAACACTTCAATGTCTTGCATTAGAGTATTGGAGAAGGGGTTGGATTTTATTACTGTGGTTTTTTACCATTGCTTGTCTTTTTGCCTGGAAATTTTACCAATACAAAAACAGATCAAGTTTTGAAGTCATGAGTTATTGTTTACCAGTAGCTAAAGGTGCTGCAGAGACACTCAAGTTCAACATGGCTCTTATTCTTTTGCCGGTTTGTCGAAATACTTTGACTTGGCTGCGTTCTACAAAAGTTCGTAAAATTGTTCCCTTTGATGACAATATCAATTTCCATAAGATGATTGCATTTGGCATAGTTGTGGGAATAGTTATTCATGCAGGAAATCATCTCGCATGCGATTTCCCTCTTCTCGTAAACTCATCACCCGAAAAGTTCTCACTGATATCTTCTGATTTCAATAACAAAAAACCTACATTCAAATCACTTTTGATTAGCATTGAAGGCATAACAGGAATCACAATGGTTACTTTGATGATAATATCATTTACTCTAGCAACTAGCCAGTTTCGAAGAAATGCCGTAAATCTTCCTTCACCATTCAACAGATTGACAGGCTTTAATGCATTTTGGTACTCACACCATCTTCTTGGTATTGTCTATGTTCTTCTGTTCCTCCACGGATCGTTCCTCAATTTAACACATAAGTGGTATCAGAAAACGACATGGATGTATATCTCTGTCCCATTGTTGCTGTACATCGCAGAGCGTACTCTACGAACTCGTAGATCACAACATTATGCAGTAAAAGTTCTGAAGGTTTCGGTGCTACCAGGAAATGTCTTTAGCTTAATCATGTCAAAGCCGAATGGATTCAAGTACAAAAGCGGCCAATACATATTTTTACAATGTCCGAAAATCTCTCCCTTTGAGTGGCATCCATTCTCCATTACATCAGCACCAGGCGATGAGTACCTAAGTGTTCACATTCGTACGGTAGGTGACTGGACACAAGAGCTTAAGCATCTTTTCACCGAAGACGACCAACTACCTCCTGTTACCGGTAAAGCAACATTTCGCGAACTAATTCAAATGGATCAAAGAGGACAACCGAAGTTGCATGTAGATGGACCGTACGGAGCTCCAGCACAAGATTATCAAAATTTCGATGTATTGCTGCTCATAGGATTAGGAATCGGAGCAACTCCCTTCATTAGTATTCTCCGAGATATTTTGAGCGACACGCGAACAATTGACGAACAAACGGACTCAAACACAGAAATAACAAAATCAGATGAAAGCTTCAATAGTTTCACATCTTCGAATGTAACGCCGGGAAGAAATAAGAGATCACAAAGGATTACAAATGCTTACTTTTATTGGGTTACTAGAGAACCTGGATCGTTTGAATGGTTTAAAGGAGTAATGGATGAAGTTGCAGAAATGGACCACAAAGGTTTGATTGAACTACACAACTATCTTACAAGTGTGTATGAAGAAGGTGATGCAAGATCAACCTTGATCACAATGATTCAAGCATTAAACCATGCCAAACATGGTGTTGACATTCTATCAGGCACTAGAGTGAGGACACATTTTGCTAGGCCTGATTGGAGAGAAGTTTTCACAAAAATTGCTTCAAAACACCCGAATTCTACAGTAGGTGTGTTCTATTGTGGGATGCCAGTGCTAGCAAAGGAGCTAAAGAAGCTATCACTTGAGCTCAGTCATAAGACAACCACACGTTTTGAATTTCATAAAGAGTACTTCTGA 2766 0.4049 MRTSSIERCTTSKNELDLPENFETESEKHVYGAMLPVFLNDLRSNHHKELVEITLELEDNAVVLRNIASAPNASPSSSHATGDETTVGLSRSLSIASRIRKKFPWLRSLSLQTSTSSSESVTAAVEDPMMARNARRMRAELERTRSSAQRGLKGLRFISKSGEASEELWRKVEKRFGFLAKDGLLDREEFGECIGMEDSKEFAVGIFDALARRKEKKEVCKITKEELRQFWLQISNQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANNLSKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLEKDRYMTYSRQHSSASVNWSQNLTSLRPKNKIQKILKTLQCLALEYWRRGWILLLWFFTIACLFAWKFYQYKNRSSFEVMSYCLPVAKGAAETLKFNMALILLPVCRNTLTWLRSTKVRKIVPFDDNINFHKMIAFGIVVGIVIHAGNHLACDFPLLVNSSPEKFSLISSDFNNKKPTFKSLLISIEGITGITMVTLMIISFTLATSQFRRNAVNLPSPFNRLTGFNAFWYSHHLLGIVYVLLFLHGSFLNLTHKWYQKTTWMYISVPLLLYIAERTLRTRRSQHYAVKVLKVSVLPGNVFSLIMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDEYLSVHIRTVGDWTQELKHLFTEDDQLPPVTGKATFRELIQMDQRGQPKLHVDGPYGAPAQDYQNFDVLLLIGLGIGATPFISILRDILSDTRTIDEQTDSNTEITKSDESFNSFTSSNVTPGRNKRSQRITNAYFYWVTREPGSFEWFKGVMDEVAEMDHKGLIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPDWREVFTKIASKHPNSTVGVFYCGMPVLAKELKKLSLELSHKTTTRFEFHKEYF 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02688 921 Pfam Ferric reductase like transmembrane component 401 555 IPR013130 -
Trre3g02688 921 FunFam Respiratory burst oxidase homolog A 586 678 - -
Trre3g02688 921 CDD EFh 221 268 IPR002048 GO:0005509
Trre3g02688 921 Pfam FAD-binding domain 598 713 IPR013112 GO:0016491
Trre3g02688 921 SFLD NADPH oxidase subgroup (NOX) 23 921 - -
Trre3g02688 921 PRINTS Cytochrome B-245 heavy chain signature 702 715 IPR000778 GO:0016020|GO:0016491
Trre3g02688 921 PRINTS Cytochrome B-245 heavy chain signature 501 524 IPR000778 GO:0016020|GO:0016491
Trre3g02688 921 PRINTS Cytochrome B-245 heavy chain signature 725 742 IPR000778 GO:0016020|GO:0016491
Trre3g02688 921 Pfam EF hand 244 266 IPR002048 GO:0005509
Trre3g02688 921 Gene3D - 711 921 IPR039261 -
Trre3g02688 921 CDD NOX_Duox_like_FAD_NADP 602 863 - -
Trre3g02688 921 FunFam Respiratory burst oxidase protein E 711 921 - -
Trre3g02688 921 Pfam Respiratory burst NADPH oxidase 141 241 IPR013623 GO:0004601|GO:0050664
Trre3g02688 921 FunFam Respiratory burst oxidase homolog A 141 259 - -
Trre3g02688 921 Gene3D Translation factors 584 682 - -
Trre3g02688 921 Gene3D - 141 259 - -
Trre3g02688 921 PANTHER NADPH OXIDASE 202 921 - -
Trre3g02688 921 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 595 716 IPR017927 GO:0016491
Trre3g02688 921 ProSitePatterns EF-hand calcium-binding domain. 251 263 IPR018247 -
Trre3g02688 921 ProSiteProfiles EF-hand calcium-binding domain profile. 238 273 IPR002048 GO:0005509
Trre3g02688 921 Pfam Ferric reductase NAD binding domain 720 903 IPR013121 GO:0016491
Trre3g02688 921 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 719 921 IPR039261 -
Trre3g02688 921 SUPERFAMILY EF-hand 157 322 IPR011992 -
Trre3g02688 921 SUPERFAMILY Riboflavin synthase domain-like 597 713 IPR017938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02688 Trre-Chr3 28442943 28450748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02688 18 921 Miscellaneous Gene Families AT1G19230 62.102 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02688 K13447 - gmx:100805697 1501.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02688 3 28442943 28450748 Trre3g02688 3 28442943 28450748 ECH