Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02492 ATGGCTTCCGTTTACATACCGGTTCAAAATTCAGAGGAAGAAGTTAGGGTTAATCTCGATCAACTTCCTAGGGATGCTTCCGATATCCTTGATATCCTTAAAGCTGAACAAGCTCCTCTCGATCTTTGGCTCATTATTGCGAGGGAGTACTTCAAGCAGGGAAAAGTTGATCAGTTTCGCCAGATTTTGGAAGAAGGATCCAGTCCAGAAATTGATGAATATTATGCTGATATTAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGGGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAAAAAGAGGAGCATTTCATTTTAGCAACACAATATTACAATAAAGCATCAAGGATAGACATGCATGAGCCCTCTACATGGGTTGGAAAAGGTCAGCTTTTGTTAGCAAAGGGTGAAGTTGAACAGGCATCTTCTGCATTTAAGATTGTGTTAGAAGGAGATCGTGACAATGTTCCTGCTCTTTTAGGCCAGGCATGTGTCGAGTTCAACCGTGGAAAATATTCGGATTCGCTTGAGTTGTATAAGAGGGCATTGCAAGTGTATCCCAATTGCCCTGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCGACAGGCATTTGAGCGTGTTTTGCAGCTTGATCCGGAAAATGTTGAGGCTCTTGTTGCACTTGCAATAATGGACTTGCGCTCCAACGAAGCTGTTGGAATTAGGAAAGGAATGGTAAAAATGCAGAGGGCATTTGAGATTTACCCGTACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGACAACATTTTTTGGTCGAGCAACTGACTGAAACTGCATTATCTGTTACCAATCATGGTCCAACAAAGTCCCACTCTTATTACAATTTAGCACGTTCTTACCATAGCAAGGGGGATTATGATAAAGCTGGGGTGTATTACATGGCGTCTGTCAAGGAAATTAGCAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTACAAATTAAGTTGGGAGATTTTAGAAGTGCACTCTCAAACTTTGAAAAGGTTTTGGAGGTGTACCCGGATAATTGCGAGACATTGAAAGCGCTTGCATACATATATGTTCAGCTTGGTCAGACTGACAAGGGCCATGAATTTATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAACTAGGAGAATTGTTAATTTTGTCCGACACAGGAGCTGCACTGGATGCATTCAAAACTGCCCGCACTCTTTTTAAAAAGGGAGGTCAGGAAGTACCAATTGAATTACTCAATAATATTGGTGTCCTCCAATTCGAAAGAGGGGAGTTTGAGTTTGCTAAACAAACTTTTAAGGAAGCTCTTGGTGATGGAATTTGGCTTTCTTTCTTTAGTGAGGCAAATAAGTCTTCCATTGACGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGTAATGGTCAACTTGTTGAAGTACCATGGGATAAAGTCACAGTACTCTTTAACCTGGCCAGATTACTTGAGCAGTTAAATGAATCTGGAACTGCAAGCATATTATATCGTCTAATCTTGTTTAAGTACCCAGACTACATTGATGCGTATCTGAGGCTAGCTTCTATTTCAAAGGCTCGGAACAACATTCTATTAAGCATTGAACTGGTTAATGATGCCCTGAAGGTGAATGACAAGTGTCCAAATGCGTTATCTATGCTGGGAGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCAAAAGAAACTCTTCGGGCAGCCAGTGATGCCACTGACGGGAAGGATTCATATGCTACACTTTCTCTAGGAAACTGGAACTACTTTGCTGCAGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAGGAGCTTTATACAAAAGTTATGATTCAGCATTCGTCTAATTTATATGCTGCCAATGGTGCTGCAGTTGTTTTTGCAGAAAAAGGCCATTTTGATGTTTCAAAAGATATCTTTACGCAGGTTCAAGAAGCTGCCAGCGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCCCATGTCTATTTTGCTCAGGGGAATTTTGCTTTGGCCGTCAAAATGTATCAGAATTGCTTGCGGAAGTTTTATCATAACACAGACTCACAAGTACTTCTATTCTTGGCACGTACCTATTATGAAGCCGAACAGTGGCAAGACTGTATTAAAACTCTACAGAGAGCCATCCATTTGGCACCCTCAAACTACACATTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACGCTTCAAAAGGCAAAGAGGACTGCAGATGAGGTGAGAGCAACGGTTGCAGGGCTGCAAAATGCTGTCCGTATATTTAGCCAGTTGTCTGCTGCTTCCAACCTACATATTCATGGGTTTGATGAGAAGAAGATTGATACTCATGTTGGATACTGCACCCACTTACTTTCGGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGTGAGGAACAACAAATACGGAAGAGACAGGAAGTTGCTCGTCAGGTTGCATTGGCTGAGGAAGCCCGGCGTAAGGCTGAAGAGCAAAGGAAAATCCAGATGGATAGGAGAAAGCATGAGGACGAGTTAAAAATAGTGCAAAAACAGGAGGAGCATTTTAAGCGTGTTAAGGAACAATGGAAGAGCAGCACACATTCAAAAAGGAGGGAAAGGTCGGATGATGAAGATGGTGGGACTGCTGAGAAAAAGAAAAGAAAAGGTGGAAAGAGAAGGAAGAAGGATAAGCACTCAAAGTCACAACATGATACGGAAGAAATGGAGCCTGATATGATGGATGAACAGGAAATGGAGGATGAAGATGCTAACACAAACTACAGAGAGGAGCTCCAAACTCATACGAACGATGTTGAGGAAAATCCTCATGGTCTTCTTGCATTAGCAGGACTTGAGGATTCTGATGCAGATGATGAGCCGGCCGGACCTTCCTCGAACATTAGCAGGCGGAGGCAAGCATTATCAGAATCTGATGACGATGAACCGATAATGAAGCAATCAAGTCCTGTAAGAGAAAATTCTGTTGATATGGAGGAGAGTGATGGAGAAATCAGGGGTGGAGAGAAGACACATGGAGATGATGCCAGTGATGAGGAAAAATAA 3255 0.4187 MASVYIPVQNSEEEVRVNLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVDQFRQILEEGSSPEIDEYYADIRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEGDRDNVPALLGQACVEFNRGKYSDSLELYKRALQVYPNCPAAVRLGIGLCRYKLGQFEKARQAFERVLQLDPENVEALVALAIMDLRSNEAVGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALSVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEISKPHEFVFPYYGLGQVQIKLGDFRSALSNFEKVLEVYPDNCETLKALAYIYVQLGQTDKGHEFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFEFAKQTFKEALGDGIWLSFFSEANKSSIDAATSTLQFKDMQLFHDLESNGQLVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDAYLRLASISKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTKVMIQHSSNLYAANGAAVVFAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYHNTDSQVLLFLARTYYEAEQWQDCIKTLQRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAGLQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCTHLLSAAKVHLEAAEREEQQIRKRQEVARQVALAEEARRKAEEQRKIQMDRRKHEDELKIVQKQEEHFKRVKEQWKSSTHSKRRERSDDEDGGTAEKKKRKGGKRRKKDKHSKSQHDTEEMEPDMMDEQEMEDEDANTNYREELQTHTNDVEENPHGLLALAGLEDSDADDEPAGPSSNISRRRQALSESDDDEPIMKQSSPVRENSVDMEESDGEIRGGEKTHGDDASDEEK 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02492 1084 Coils Coil 801 821 - -
Trre3g02492 1084 SUPERFAMILY TPR-like 107 296 IPR011990 GO:0005515
Trre3g02492 1084 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1082 IPR031101 GO:0006355|GO:0016570
Trre3g02492 1084 Pfam Tetratricopeptide repeat 718 782 - -
Trre3g02492 1084 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Trre3g02492 1084 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 524 557 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 162 195 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 713 746 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 376 409 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 448 477 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 342 375 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 592 625 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 749 782 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 305 338 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 197 230 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 558 591 IPR019734 GO:0005515
Trre3g02492 1084 SMART tpr_5 128 161 IPR019734 GO:0005515
Trre3g02492 1084 Pfam Tetratricopeptide repeat 354 412 - -
Trre3g02492 1084 MobiDBLite consensus disorder prediction 1036 1084 - -
Trre3g02492 1084 FunFam Rna polymerase-associated protein ctr9 651 835 - -
Trre3g02492 1084 FunFam protein CTR9 homolog 507 650 - -
Trre3g02492 1084 Coils Coil 855 902 - -
Trre3g02492 1084 SUPERFAMILY HCP-like 203 435 - -
Trre3g02492 1084 MobiDBLite consensus disorder prediction 915 1084 - -
Trre3g02492 1084 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Trre3g02492 1084 SUPERFAMILY TPR-like 518 793 IPR011990 GO:0005515
Trre3g02492 1084 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Trre3g02492 1084 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Trre3g02492 1084 Gene3D Tetratricopeptide repeat domain 650 835 IPR011990 GO:0005515
Trre3g02492 1084 Gene3D Tetratricopeptide repeat domain 510 646 IPR011990 GO:0005515
Trre3g02492 1084 Gene3D Tetratricopeptide repeat domain 344 506 IPR011990 GO:0005515
Trre3g02492 1084 Pfam Tetratricopeptide repeat 168 228 - -
Trre3g02492 1084 MobiDBLite consensus disorder prediction 915 949 - -
Trre3g02492 1084 FunFam protein CTR9 homolog 9 336 - -
Trre3g02492 1084 ProSiteProfiles TPR repeat profile. 749 782 IPR019734 GO:0005515
Trre3g02492 1084 MobiDBLite consensus disorder prediction 972 988 - -
Trre3g02492 1084 Gene3D Tetratricopeptide repeat domain 8 333 IPR011990 GO:0005515
Trre3g02492 1084 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Trre3g02492 1084 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Trre3g02492 1084 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02492 Trre-Chr3 24331508 24347619 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02492 K15176 - gmx:100794371 1917.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02492 3 24331508 24347619 Trre3g02492 3 24331508 24347619 ECH