Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02427 ATGGGTGGAGATAGAGGAAGTAGTAATAATAATGATGATGAGAAAGTTGAAGTGAACATATATCCTCTCAATTCTTACTATTTTGGATCCAAAGATTCTATTCCTTCTAAAGATCATTCACTTCATCATCGTCTTCAAAGAATCAAATCCAACTTTGATTCCCGTGGAATGCGAACTTGTGTGGAAGCTGTTATGATGGTTGAGTTGTTCAAACATCCACATTTGTTGTTGTTTCAAATAAAAAATTCCATCTTTAAACTTCCCGGTGGCCGTTTGAGGCCAGATGAATCAGATATCGATGGATTGAAACGGAAGCTCACAAGGAACCTTTCTCTTGATGAAGATGGAGTTGGGACAGAATGGGAGGTGGGAGAGTGCCTTGGAATGTGGTGGAGACATGATTTTGAAACATTAATGCACCCCTTCTTACCACCTAATGTCAAACATCCAAAGGAGTGTACAAAACTTTTCCTTGTAAAGCTTCCGGAAAGTCGAAGGTTCACCGTGCCAAAGAACATGAAGTTGCTTTCAGTTCCATTGTGTCAAATTTGTGAAAATCAAAAGACATACGGGCCAATTATATCGGCAGTCCCACAGCTACTCTCAAAATTCTCTTTCAATATGATTGGAATTTAA 636 0.3884 MGGDRGSSNNNDDEKVEVNIYPLNSYYFGSKDSIPSKDHSLHHRLQRIKSNFDSRGMRTCVEAVMMVELFKHPHLLLFQIKNSIFKLPGGRLRPDESDIDGLKRKLTRNLSLDEDGVGTEWEVGECLGMWWRHDFETLMHPFLPPNVKHPKECTKLFLVKLPESRRFTVPKNMKLLSVPLCQICENQKTYGPIISAVPQLLSKFSFNMIGI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02427 211 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 13 209 IPR016706 GO:0003729|GO:0005849|GO:0006378
Trre3g02427 211 Pfam Nucleotide hydrolase 17 204 IPR016706 GO:0003729|GO:0005849|GO:0006378
Trre3g02427 211 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 16 208 - -
Trre3g02427 211 FunFam Pre-mRNA cleavage factor Im subunit 2 16 208 - -
Trre3g02427 211 SUPERFAMILY Nudix 57 163 IPR015797 -
Trre3g02427 211 PIRSF CPSF-25 4 210 IPR016706 GO:0003729|GO:0005849|GO:0006378
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02427 Trre-Chr3 23278643 23282435 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02427 K14397 - gmx:100791216 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02427 3 23278643 23282435 Trre3g02427 3 23278643 23282435 ECH