Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02413 ATGGAGTGCGTTGGAGCAAGAAACTTAGCAGCAATGGCGTTTTGCTTAAGTCCTTCTTCAAGATTACGGTTACGGAGGAAGAAGCTTTGGAGAAGAAGAGGAGTTTCGAGTAACGCGATTCGGTTGCGTTCGCATTCGCTGAAATTGGAGGCGAAAGCAAGTACAGGAAGCGAGAGTTGCGTTGTTGCTAGAGAGGATTTTGCTGATGAGGAAGATTTTGTTAAAGCTGGTGGCTCTGAACTTGTTTTTGTTCAAATGCAGCAAAGGAAATCAATGGAAATGCAGTCGAAGCTTGCAGATAAGTTGCCACCTATCTCCCTTGGAGATGAAATACTGGATCTAGTTGTGATTGGTTGTGGTCCTGCTGGTCTTGCTCTAGCTGCTGAATCAGGCAAGTTAGGATTAAAAGTTGGGCTTATAGGTCCGGATCTCCCTTTTACAAACAATTATGGTGTGTGGGAGGACGAATTTAAAGATCTTGGACTTGAAGGTTGTATTGAGAATGTTTGGAAGGATACCGTTGTATATATTGATAATAAAGATCCCATTTTAGTTGGACGTTCTTATGGCCGAGTCAGTCGGCATTTGCTTCACGAGGAATTGTTAAAAAGGTGTGTCGAGTCAGGTGTCTCATACCTTGGCTCAAGAGTTGAAAGGATTGTTGAGGCTAGCAATGGTCATAATCATGTCGTCTGTGAATATGATACAGTAGTTCCCTGCAGGCTTGCTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTACAGTATGAGGTTGGGGGTCCAAAGGTGTGTGTACAAACAGCTTATGGTGTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAATGTGATGGTTTTCATGGATTACAGAGACTATATGAAGAAAAATGTTCAAAGTCTAGAAGATAAATATCCAACATTTCTTTATGTGATGCCCATGTCTCCTACAAAAGTGTTCTTCGAGGAAACATGTTTGGCGTCAAAAGATGCCATGCCTTTTGATTTATTAAAGCAAAAGCTCTTTTCAAGATTAAATACGATGGGGATCAGAATTTCAAAAACTTATGAAGAGGAATGGTCTTATATCCCAGTGGGCGGATCCTTACCGAACACAGAGCAGAAGAACCTTGCATTTGGTGCAGCTGCCAGCATGGTGCATCCAGCCACAGGCTACTCTGTTGTGAGATCGTTGTCGGAAGCTCCAGAATATGCTAAAGTAATTGCTACTATTTTGAATGAGAGTAATACAGGGGACATTGTTACTCGTGAAAGAATTAAAGAGAATCCATCTATGCGAGCTTGGAACACACTTTGGCCACAAGAAAGGAAACGGCAGAGGTCATTCTTTCTTTTTGGATTAGCACTAATTGTGCAGCTGGACATTGAGGGCACTAGAACATTTTTTCGTACTTTCTTCTGCTTACCTGAGTGGATGTGGCAAGGATTTCTTGGTTCTTCTCTATCCTCAAAAGATCTTCTATTATTTGCACTCTACATGTTCATAATAGCACCAAATGACTTAAGAATGTCTCTAGTCAGACATCTGCTTTCAGATCCTACAGGGAAGACTATGATTAAAACCTACTTGACGATATAG 1602 0.4157 MECVGARNLAAMAFCLSPSSRLRLRRKKLWRRRGVSSNAIRLRSHSLKLEAKASTGSESCVVAREDFADEEDFVKAGGSELVFVQMQQRKSMEMQSKLADKLPPISLGDEILDLVVIGCGPAGLALAAESGKLGLKVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIENVWKDTVVYIDNKDPILVGRSYGRVSRHLLHEELLKRCVESGVSYLGSRVERIVEASNGHNHVVCEYDTVVPCRLATVASGAASGKLLQYEVGGPKVCVQTAYGVEVEVENNPYDPNVMVFMDYRDYMKKNVQSLEDKYPTFLYVMPMSPTKVFFEETCLASKDAMPFDLLKQKLFSRLNTMGIRISKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPEYAKVIATILNESNTGDIVTRERIKENPSMRAWNTLWPQERKRQRSFFLFGLALIVQLDIEGTRTFFRTFFCLPEWMWQGFLGSSLSSKDLLLFALYMFIIAPNDLRMSLVRHLLSDPTGKTMIKTYLTI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02413 533 PANTHER - 25 531 - -
Trre3g02413 533 NCBIfam lycopene cyclase family protein 113 513 IPR010108 GO:0016117|GO:0016705
Trre3g02413 533 Gene3D - 111 444 IPR036188 -
Trre3g02413 533 Pfam Lycopene cyclase protein 113 510 - -
Trre3g02413 533 FunFam lycopene epsilon cyclase, chloroplastic 109 452 - -
Trre3g02413 533 SUPERFAMILY FAD/NAD(P)-binding domain 109 506 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02413 Trre-Chr3 23149594 23156498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02413 K06444 - gmx:100790686 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02413 3 23149594 23156498 Trre3g02413 3 23149594 23156498 ECH