Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02388 ATGGTTGTTAGGATTCGGTTATCACGTTTAGGGTGCAAAAACAAACCATTCTACCGTGTCATGGCTGCTGATAGCAGATCTCCGAGAGACGGTAAACATTTCGAAGTTCTCGGTTACTACAATCCCTTACCTGGTCAAGATGGTGGCAAAAGAATGGGTATCAACTTTGATAGAGTCAAGTATTGGCTTTCTGTTGGAGCTCAACCGTCGAATCCTGTTGAGCGTCTTCTGTTTCGGGCAGGGCTACTTCCTCCACCACCGACTGTGGCTATGGCGCGTAAAGGTGGACCACGCGACACACGTCCTGTTGATGCTTTAACCGGACGTGTCCTTGGTGAACAGAAGCCTCCTAATTCCAACAACAGTGACACTACAGTAACTGAAAACCCTTGA 393 0.4784 MVVRIRLSRLGCKNKPFYRVMAADSRSPRDGKHFEVLGYYNPLPGQDGGKRMGINFDRVKYWLSVGAQPSNPVERLLFRAGLLPPPPTVAMARKGGPRDTRPVDALTGRVLGEQKPPNSNNSDTTVTENP 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02388 130 Hamap 30S ribosomal protein S16 [rpsP]. 2 80 IPR000307 GO:0003735|GO:0005840|GO:0006412
Trre3g02388 130 PANTHER 30S RIBOSOMAL PROTEIN S16 1 94 IPR000307 GO:0003735|GO:0005840|GO:0006412
Trre3g02388 130 MobiDBLite consensus disorder prediction 113 130 - -
Trre3g02388 130 SUPERFAMILY Ribosomal protein S16 3 94 IPR023803 -
Trre3g02388 130 Pfam Ribosomal protein S16 9 70 IPR000307 GO:0003735|GO:0005840|GO:0006412
Trre3g02388 130 Gene3D - 1 122 IPR023803 -
Trre3g02388 130 FunFam 30S ribosomal protein S16 1 107 - -
Trre3g02388 130 NCBIfam 30S ribosomal protein S16 3 82 IPR000307 GO:0003735|GO:0005840|GO:0006412
Trre3g02388 130 MobiDBLite consensus disorder prediction 84 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02388 Trre-Chr3 22817830 22819156 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02388 K02959 - gmx:100499851 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02388 3 22817830 22819156 Trre3g02388 3 22817830 22819156 ECH