Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02351 ATGGAGACTCCTCCTTCAACACAAGGTGCTGCTGTAGTGAAGAAGAAAGAAACAAGAGGTAGAAAACCTAAGCCAAAGGAAGACAAAAAAGAAGAACAACAACAAAATGTTAAGTCACCAAAAGAATCGAAAAAATCACAACAACATCAACAAAATCAACAACAGCAACAACAACAACAAGCTTCTGTTGATGAGAAATACACTCAATGGAAATCCCTTGTTCCTGTTCTTTATGATTGGCTCGCTAATCATAACCTTGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAAGCTACTTATAAGAATCGACAGCGGTTATATCTTTCTGAGCAGACTGATGGTAGTGTTCCCAATACTTTGGTGATTGCGAATTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCAGAGCATATTTCACAGTTTAACGAAGAGGCCCGCTCTCCGTTTGTGAAGAAGTACAAGACTATCATACATCCAGGAGAGGTGAACAGAATTAGAGAATTGCCACAAAATTCCAAGATTGTGGCTACTCACACAGACAGCCCTGATGTTCTCATTTGGGATGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAATTCTCGTCCTGATTTGATATTGACTGGACACCAAGATAATGCCGAGTTCGCTCTTGCAATGTGCCCAACTGAACCCTATGTGCTCTCAGGAGGAAAGGATAAAACAGTGGTGTTGTGGAGTATTGAAGACCATGTAACTTCTGCTGCTACAGACTCCAAATCTGGTGGATCCATTATCAAAAATGACAAAAATGCTGATAGCCCTTCTGTCGGACCAAGAGGTATCTACTCTGGCCATGATGATACTGTTGAAGATGTGGCTTTTTGCCCTTCTAGTGCGCAGGAATTCTGTAGTGTTGGAGACGATTCTTGTCTCATATTATGGGACGCACGTGTTGGCTCAAGTCCTACAGTTAAGGTTGAAAAAGCTCACAATGCTGATCTTCACTGTGTGGACTGGAGTCCCCATGATGACAATCTGATTCTTACTGGGTCGGCTGATAATTCTGTTCGCTTGTTCGATCGTCGCAATCTCACCTCCAATGGTGTTGGTTCTCCCATCCATATATTTGAGGCTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAAGCGTCTGTATTTGGAAGTTCAGCAGAAGACGGTCTCTTGAACATTTGGGATTATGAGAAGGTTGGTAAAAAGATAGAGCGAGCTGGAAAAACTATAAATTCTCCTCCAGGGCTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTCCACTGGAATGCATACGATCCATGGACAATTGTTAGTGTGTCCGATGACTGTGAAAGTACTGGCGGAGGAGGAACATTGCAGATATGGCGCATGAGTGATTTGCTCTACAGACCAGAGGATGAGGTTTTGGAAGAGCTGGAGAAATTCAAAGCTCATGTGGTGGCTTGTGCTGCAAAGACCGAAAAGGCCGAAAAATGA 1533 0.4364 METPPSTQGAAVVKKKETRGRKPKPKEDKKEEQQQNVKSPKESKKSQQHQQNQQQQQQQQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSAATDSKSGGSIIKNDKNADSPSVGPRGIYSGHDDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPTVKVEKAHNADLHCVDWSPHDDNLILTGSADNSVRLFDRRNLTSNGVGSPIHIFEAHKAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLEELEKFKAHVVACAAKTEKAEK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02351 510 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 65 131 IPR022052 -
Trre3g02351 510 MobiDBLite consensus disorder prediction 256 271 - -
Trre3g02351 510 FunFam WD-40 repeat-containing protein MSI4 39 493 - -
Trre3g02351 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 412 IPR001680 GO:0005515
Trre3g02351 510 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Trre3g02351 510 Pfam WD domain, G-beta repeat 281 316 IPR001680 GO:0005515
Trre3g02351 510 Pfam WD domain, G-beta repeat 329 361 IPR001680 GO:0005515
Trre3g02351 510 Pfam WD domain, G-beta repeat 371 410 IPR001680 GO:0005515
Trre3g02351 510 PANTHER WD40 REPEAT FAMILY 55 491 - -
Trre3g02351 510 MobiDBLite consensus disorder prediction 256 279 - -
Trre3g02351 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 412 - -
Trre3g02351 510 MobiDBLite consensus disorder prediction 46 60 - -
Trre3g02351 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 361 - -
Trre3g02351 510 Gene3D - 25 493 IPR015943 GO:0005515
Trre3g02351 510 SMART WD40_4 153 192 IPR001680 GO:0005515
Trre3g02351 510 SMART WD40_4 370 410 IPR001680 GO:0005515
Trre3g02351 510 SMART WD40_4 276 316 IPR001680 GO:0005515
Trre3g02351 510 SMART WD40_4 428 475 IPR001680 GO:0005515
Trre3g02351 510 SMART WD40_4 207 247 IPR001680 GO:0005515
Trre3g02351 510 SMART WD40_4 321 361 IPR001680 GO:0005515
Trre3g02351 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 361 IPR001680 GO:0005515
Trre3g02351 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 325 IPR001680 GO:0005515
Trre3g02351 510 MobiDBLite consensus disorder prediction 21 45 - -
Trre3g02351 510 MobiDBLite consensus disorder prediction 1 60 - -
Trre3g02351 510 SUPERFAMILY WD40 repeat-like 152 477 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02351 Trre-Chr3 22173953 22179571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02351 K10752 - gmx:100779302 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02351 3 22173953 22179571 Trre3g02351 3 22173953 22179571 ECH