Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02263 ATGGAAAACTCTGAACCACAATCAAAGAAGAAAAGAAAAAGTAAAAGAAAAATTGATACTGAACCGGTTCATGAACCAGTTCATGAACCGGTTAAGGTTAAGGTTGAAGTTGTTCGTATGGATCCAAACACAATGGCACCATTGGTTGGTTATTTTCCGTCTGGATTTGATCCGGTTAAGCAGCCGGGTTCGACCGATGTTCAAGTTTATAGAAACCCTAAGGATACGAGGACTGAGCTTGTTGTTAGTCCTGCTGATTGTTCGGTTGAATTTGTCGGAAGGAATTATGATGGTGAGGCGTCATCTGGACATCGATGGAGTTATGCGCTTGGTGTTTTTGATAAAGAAGCTAAGACACTTAAGGTTATGAAAATTGGTGCTGATAAGATACTTAGATTGGAACCGAGACTTAGAGGTGTGGAATATAAGGAGCCGCCTCCGCCTACGACTGTGGAAGAGATGAGTCTGGAAAAGTGGAAAGAGAAACACGATAAGCTTAATGCTTCTCTCGGAACAAAGAGGGGAAATGAGATGAGACAAAAGATGGCTGAAATCAGAAAAGACGAAGAACCTGAAGCTAGACAGAATCTAGATGAGAAAATGAAAAATGTTGAAGTAAAAGAATTTGCTCTTGCAAATACAGAAGCTCATGTTGCTCGCCAGATACCACCATATAATGCTTCTGCAACTACACCTCAGGAGGCTTATATATTGGACGAAATCATCCTTTCAGGAGAATGGACTTACCTTCAAGACATTTATTATAGTTTGAAGAAGGAATCAGACTTCAGTGGTTACCCAACGTTTATTCGCAACAGGATAGACAGAATAAAGAAGATTGAGGACGAGGATGAAAAGAAGAAGCTATGTTCCATACTCGCATTCATCAATCATCTTGTCAAATTCAAAGATCAGCACTCCATGGATGGTGTTTCCTCTTCAAAGCATCATAAAATTCCCCACATTCTACAACATAGATTTAATACAATGTTTGCTGCTGATACTGAATCAAGAAGGCTGCCACGTGAAAAGATTAATCTTCTCCATTCTTATGTTTTGGTGCTCACACTTTTCTCCGACGAATTCCAGACTATTCCCACCGATATATCAAAGGATCTGAGGATGCCTCAAACTTCGGTGAAACAAATATATCAGCATTTGGGTTGCAAATTTTCTAGAAGGGATGGATTTTTCTGTGCCACTCTTCCTGTCCCTCTTAAATTTCCTCAGTTAAAAACTAAGTCGAGGGCGAGAAAGAATTGA 1263 0.399 MENSEPQSKKKRKSKRKIDTEPVHEPVHEPVKVKVEVVRMDPNTMAPLVGYFPSGFDPVKQPGSTDVQVYRNPKDTRTELVVSPADCSVEFVGRNYDGEASSGHRWSYALGVFDKEAKTLKVMKIGADKILRLEPRLRGVEYKEPPPPTTVEEMSLEKWKEKHDKLNASLGTKRGNEMRQKMAEIRKDEEPEARQNLDEKMKNVEVKEFALANTEAHVARQIPPYNASATTPQEAYILDEIILSGEWTYLQDIYYSLKKESDFSGYPTFIRNRIDRIKKIEDEDEKKKLCSILAFINHLVKFKDQHSMDGVSSSKHHKIPHILQHRFNTMFAADTESRRLPREKINLLHSYVLVLTLFSDEFQTIPTDISKDLRMPQTSVKQIYQHLGCKFSRRDGFFCATLPVPLKFPQLKTKSRARKN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02263 420 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 32 418 IPR009668 GO:0003677|GO:0006351
Trre3g02263 420 MobiDBLite consensus disorder prediction 1 27 - -
Trre3g02263 420 Pfam A49-like RNA polymerase I associated factor 63 409 IPR009668 GO:0003677|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02263 Trre-Chr3 20744759 20748732 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02263 K03005 - gmx:100812427 417.927