Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02236 ATGAAACTTGACATCGAGCACTCGATTACGCATTTACCCAACTTGAAAGAAAGGATTGAGGGTTCGTTAGTCTCTAAAAATGGTTATAGAGCTTCTCTTTCTCCGTCATTAACCCGTAGAACCATACTAGCCAATATCTCAATAGGCCAACCTCCCGTCTCACAATTACTCATCATGGACACTGGGGGTCAGATCTTCTGGACAATGTGTACCCCTTGCACAAGTTGTACCAAGTATCGAGGTCAAATGTTCGATCCTTCAAAGTCGTCGACCTATTCTCAATCATGCCGCAAACCATGTTACGTTAAGGGCTGCAAATGCGACCCGTTTACATACAGCATCACCTACGTAGACAACTCCTTCTCATCAGGAACAATTGGTAGTGACACGTTAGTCTTTGAGACGGGTGACGAAGGTATCACCCTTTTAACCAATATAACATTCGGTTGTGCTAATGATATTATATATGGTCCTGATCCAGGCTACAACGGAGTACTAGGGTTAGGATTTAACAATGATGAATTGTCTTTGCTCAGACAAATAGGTCCAAAATTCTCTTACTGTATAGGTAGCTTAACCGACAAGTATTATGACTACAACCATTTAATATTAGGTGAAGGAGCAAATCTTGAAGGTTATACTACACATTTTGAAGTGCATGACGGACACAACTATGTAACCATGGAAGGCATAAGTGTAGGAGAAAATTGTCTTAATATAGAACCAAGTACTTTTGAGATCAAAGAGAATGGCACAGGTGGAGTTATCATTGATACTGGAAGTACAATCTCCTATTTTGATGATGATGTGTATGTATTACTATATCATGAAATTCAAAAACTATTTGAAGGGTCACTTAAAAAAGTTATATTTCCAATATATCCATGGATGCTTTGTTACGCTGGGAGTATAAGTAAGGACCTTACAGGATTTCCAGTGGTTACATTCCACCTTGCTGGAGGAGCAGATTTAGTTTTAGACTCATTAAGCTTTTTTGAACAATATGTGGATGCGTTTTGTATGACTGTGGGTCCAAGCAGTCAGGTAGGCATTGATGTTTCACTTATTGGGTTATCAGCGCAACAGAGTTACAATGTGGGATATGACAAATCTAATAGCCTTATGTACTTGCAAAGAATTGATTGTGAACTTCTTAGTAACTGA 1164 0.39 MKLDIEHSITHLPNLKERIEGSLVSKNGYRASLSPSLTRRTILANISIGQPPVSQLLIMDTGGQIFWTMCTPCTSCTKYRGQMFDPSKSSTYSQSCRKPCYVKGCKCDPFTYSITYVDNSFSSGTIGSDTLVFETGDEGITLLTNITFGCANDIIYGPDPGYNGVLGLGFNNDELSLLRQIGPKFSYCIGSLTDKYYDYNHLILGEGANLEGYTTHFEVHDGHNYVTMEGISVGENCLNIEPSTFEIKENGTGGVIIDTGSTISYFDDDVYVLLYHEIQKLFEGSLKKVIFPIYPWMLCYAGSISKDLTGFPVVTFHLAGGADLVLDSLSFFEQYVDAFCMTVGPSSQVGIDVSLIGLSAQQSYNVGYDKSNSLMYLQRIDCELLSN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02236 387 PANTHER OS07G0603500 PROTEIN-RELATED 27 382 - -
Trre3g02236 387 Gene3D Acid Proteases 28 205 IPR021109 -
Trre3g02236 387 SUPERFAMILY Acid proteases 43 382 IPR021109 -
Trre3g02236 387 CDD pepsin_A_like_plant 43 382 IPR034161 -
Trre3g02236 387 Pfam Xylanase inhibitor N-terminal 44 205 IPR032861 -
Trre3g02236 387 Gene3D Acid Proteases 213 385 IPR021109 -
Trre3g02236 387 ProSiteProfiles Peptidase family A1 domain profile. 42 378 IPR033121 -
Trre3g02236 387 Pfam Xylanase inhibitor C-terminal 225 375 IPR032799 -
Trre3g02236 387 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 255 266 IPR001969 GO:0004190|GO:0006508
Trre3g02236 387 FunFam Aspartyl protease family protein 208 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02236 Trre-Chr3 20477682 20478845 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02236 46 285 Miscellaneous Gene Families AT1G77480 25.194 1.29e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02236 - - gmx:100781790 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02236 3 20477682 20478845 Trre3g02236 3 20477682 20478845 ECH