Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02194 ATGGCAACAGAGAGTCCAATTAGAATCTCGGAAGCCGGAGGGAAATGGCCCTCACATATTGAAACTTCAGCTTTTGGCGCACCACCTCGTAACATGGGGGCAGAGGATTTGGGTATTCTGTTGAAGGGAAATAGGTTCCGTGGTAGTGCAAAGGATGTGGCACCCAATCGTAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACCTATTACCACTTCAGAGCACCCAGGATGCAAGCTTGACAACTCTTAGCAGAGCTGTGAAAAATTGCCAATCTGAAGAACAGTTACGAGCTGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTAACTTCCTGGGAAAACCGCCATATAGGGCATCGTACTGGTAGTTCTAGGAATAATTGGGGATTGTCTTCTGCAGAACATAGAAGTAACAGTTCTTTACATTTACCTCAAGCAACTCTTTCAACACACAAGGAGGAGTCTGAGGATGATTCAATCCAACAACAGGCATATGAAAATGAATTAGTTAAGATAAGTGGAGTTAGGCGTAGACAGGATGCAGCTTCATCAGCATCACAGCAAAAAAATGTGGTTGATTTAATTCAGGAGGATTTTCCTCGCACAATGTCACCTGTATATAATATGTCCCTTTCTGTAAGTCATGGACTCGTGGATAAACCAATTGAATTAGAAGCTGGTTCCAGTTCTTCTCATGACCCTCATGTTACTGCAGTAGAGTCTGCTAAACCTACTGCAGGTGCGGATGATATTAGGGTGTCATCAAGTGTCGATTTTCACACCCCTGTTGCAAGCTCTTCAACATTTGAATCGACAGCTAGCATGGGTTTTAGTAACTTAGATGTTGCAAATGTTGCATCTCAACTGAAGACACTTAGTGTATCTAACCTACCCAATTCAGAAAGCCTGAGTTATGAAGAAAAATTGAAGACCAGCTACCAGAACAATATGATGCAACGGCAGGTATTCCCGCAACAAAGCAATCCGTATGAAGTTCCTAGTGCCAATTCTCAAAATGTAAACAACGCCTACCCTGGCAGGGAACAATTTCCTCATAATTCAAGCAAGTTGTCTGATGTCCAGCCACTACTTCAGTCATCGGGGTTTACACCTCCCTTATATGCCACAGCAGCAGCTTATATGACCTCTGTAAATCCATTTTACACTAATATGCAGGCCTCGGGCTCTTATTCTCCTCAATTTGTTGGTGGATACACTTTAAATCCTACAGCTATTCACCCATATATTTCTGCATACCCTCCTCATGGTGTTGTACCATTTGTTGATGGGGCTACTAGTTCTAATTATACCCCGCTAACACCCGGGGTTTCGACCGGGGGTAGTATTCCACATGGAGCTGAAATAATACATGCAAACAAGTACCTTGGGCAATTTGGATATCCTGTACAGCCTCCTTTTGGTGATCCTATTTACATGCAGTATAATCAGCAACCTTTTGTGGAGGGATTTGGTATTCCTGGTCATTTTGATCCACTGGCATCTAGAGCAAGTGGTGTTAACCAAATAAATCCTTATGATTCACAAAAAAGGCCTGGTACTGGGGCTTATTTGGATGATAAAAAATTACATGAACAAAGAACTGGTGCTAATATGAACTCAAGAAGAGGTGGATTATCGGTTCCTAGTTATTATGGACATATGCCAAATACGGGCTTTGTAATGCAGTATCCAAGTTCACCACTCCCCAGTCCAGTTTTGTCCGGATATCCTGAAGGAAGTCCTGGCCTTTCAGGAGGTAGAAATGAAATGAAACCTTTCCCAGCTTCTGGTAGAAATGGAGGCATGGTATCTGGATGGCATGGTCCAAGGTCCTTTGAAAGTGGTCAAGACCCCAAGATTGTTAACTTCCTTGAAGAGTTGAAATCTGGCAAAGGTCGCAGATTTGAACTATCCGATATTATTGGACATATTGTTGAATTTAGTGCTGATCAGCATGGAAGTCGATTTATACAACAGAAGTTGGAAAGTTGTGGTGTTGAAGAAAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTCGGTAACTACGTAATACAGAAGTTCTTTGAGTATGGAAACCCCGAGCAGAGGAGGGAACTTGCAGATAAACTGACTGGTCAGATACTTCCTTTAAGTCTGCAGATGTATGGCTGTCGCGTAATCCAAAAGGCACTCGAGGTTATTGAGCATGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATATCATGAGATGTGTTCGTGATCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACCAAAAAAATTGGCTTTGTACTATCTGCATTTCGTGGTCAAGTTGCTAATTTATCAATGCATCCTTATGGTTGTCGTGTCATCCAGAGAATTCTAGAGCATTGTACAGATGAGGTTCAGTGTCAGTTCATTGTCGATGAAATCTTGGAGTCAGTTTGTTCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGAAAACCTCAAGAAAGGAGCCAAATAATCAGCAAGCTGTCTGGAAATGTTGTTCAATTTAGCCAGCATAAGTTTGCTTCGAATGTTGTGGAGAAATGTCTAGAGTACGGAGATGCATCTGAACGGGAATTGTTAATTGTAGAGATTATTGGGCCTGATGGGAAAAATGATAATTTATTGACAATGATGAAAGATCAATTTGCAAATTACGTGATTCAGAAGGTTATTGATATCTGTTCTGATAATCAGCGAGCAATGTTACTTTCTCACATAAGAGTCCATGCTCATGCTTTGAAGAAATATACTTATGGAAAACACATTGTGGCTCGTTTGGAAAACCAATTTGGAGATAATCAAACACAAAGTTCATGA 2955 0.4156 MATESPIRISEAGGKWPSHIETSAFGAPPRNMGAEDLGILLKGNRFRGSAKDVAPNRSGSAPPSMEGSFLAIENLLPLQSTQDASLTTLSRAVKNCQSEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHIGHRTGSSRNNWGLSSAEHRSNSSLHLPQATLSTHKEESEDDSIQQQAYENELVKISGVRRRQDAASSASQQKNVVDLIQEDFPRTMSPVYNMSLSVSHGLVDKPIELEAGSSSSHDPHVTAVESAKPTAGADDIRVSSSVDFHTPVASSSTFESTASMGFSNLDVANVASQLKTLSVSNLPNSESLSYEEKLKTSYQNNMMQRQVFPQQSNPYEVPSANSQNVNNAYPGREQFPHNSSKLSDVQPLLQSSGFTPPLYATAAAYMTSVNPFYTNMQASGSYSPQFVGGYTLNPTAIHPYISAYPPHGVVPFVDGATSSNYTPLTPGVSTGGSIPHGAEIIHANKYLGQFGYPVQPPFGDPIYMQYNQQPFVEGFGIPGHFDPLASRASGVNQINPYDSQKRPGTGAYLDDKKLHEQRTGANMNSRRGGLSVPSYYGHMPNTGFVMQYPSSPLPSPVLSGYPEGSPGLSGGRNEMKPFPASGRNGGMVSGWHGPRSFESGQDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGNPEQRRELADKLTGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTKKIGFVLSAFRGQVANLSMHPYGCRVIQRILEHCTDEVQCQFIVDEILESVCSLAQDQYGNYVTQHVLERGKPQERSQIISKLSGNVVQFSQHKFASNVVEKCLEYGDASERELLIVEIIGPDGKNDNLLTMMKDQFANYVIQKVIDICSDNQRAMLLSHIRVHAHALKKYTYGKHIVARLENQFGDNQTQSS 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02194 984 Gene3D - 637 982 IPR011989 -
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 800 836 IPR001313 GO:0003723
Trre3g02194 984 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g02194 984 FunFam Pumilio homolog 1 isoform 2 635 983 - -
Trre3g02194 984 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 108 974 - -
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 837 872 IPR001313 GO:0003723
Trre3g02194 984 SUPERFAMILY ARM repeat 641 973 IPR016024 -
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 909 950 IPR001313 GO:0003723
Trre3g02194 984 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 636 976 IPR033133 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 804 839 IPR001313 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 877 911 IPR001313 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 919 952 IPR001313 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 775 788 IPR001313 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 660 694 IPR001313 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 732 765 IPR001313 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 842 874 IPR001313 GO:0003723
Trre3g02194 984 Pfam Pumilio-family RNA binding repeat 697 729 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 915 950 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 800 836 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 692 727 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 873 908 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 656 691 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 837 872 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 728 763 IPR001313 GO:0003723
Trre3g02194 984 SMART pum_5 764 799 IPR001313 GO:0003723
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 656 691 IPR001313 GO:0003723
Trre3g02194 984 CDD Pumilio 651 972 IPR033712 GO:0003723
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 873 908 IPR001313 GO:0003723
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 692 727 IPR001313 GO:0003723
Trre3g02194 984 MobiDBLite consensus disorder prediction 243 264 - -
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 764 799 IPR001313 GO:0003723
Trre3g02194 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 728 763 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02194 Trre-Chr3 19715260 19722308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02194 K17943 - gmx:100811036 1601.26