Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02180 ATGTTGGGTGGTTCACTCTCAACTCCAACAACTCAATGTCTTAAGACAAGAACAACAACAATTACAATGCTTTATCCATCTCATAGATTATTGTCCACACATTTTTGTCTCTTTAAGAATCTTATATCAGGTACTAGAAGATTTTCTTCAAATGAGAGTTGTTTTCTCAGAGGACATCAAATTAATATTAAGCAATTTTTTGGGCTTATCTCTCATAGAGCTCCAAGAAAAAAAGCAGGATTTGTTGTTTCTCCAAGATGTGTTCTGCCACTGACAGAAGAGAATGTGGAGAGGGTTTTGGATGAGGTAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTGGCCTTACATGAGATAGATGGTCTTGTTGTTATCCTCAAACTACAAGGAGCATGTGGATCATGTCCTAGCTCAACAATGACATTAAAAATGGGGATCGAAACTCGCCTGCGCGATAAGATTCCAGAAATCTTAGAAGTAGAGCAGATACTAGATACTGAGACTGGTCTTGAGTTAAACGAAGAAAATGTTGAAAGTGTTCTTTCAGAAATTAGACCATATCTTATCGGCACAGGAGGAGGAACATTAGAGCTTGTTGAGATTAATGATTACATTGTTCAAGTTCGGTTAAGTGGACCAGCAGCAGGAGTTATGACAGTTCGCGTTGCCTTAACACAGAAACTGCGAGACAAGATACCTTCTATTGCTGCTGTGCAGCTAATAGAATGA 729 0.3923 MLGGSLSTPTTQCLKTRTTTITMLYPSHRLLSTHFCLFKNLISGTRRFSSNESCFLRGHQINIKQFFGLISHRAPRKKAGFVVSPRCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENVESVLSEIRPYLIGTGGGTLELVEINDYIVQVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLIE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02180 242 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 93 167 IPR034904 -
Trre3g02180 242 Pfam NifU-like domain 96 161 IPR001075 GO:0005506|GO:0016226|GO:0051536
Trre3g02180 242 Pfam NifU-like domain 177 239 IPR001075 GO:0005506|GO:0016226|GO:0051536
Trre3g02180 242 FunFam NifU-like protein 3, chloroplastic 171 241 - -
Trre3g02180 242 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 171 241 IPR034904 -
Trre3g02180 242 Gene3D - 171 242 IPR034904 -
Trre3g02180 242 FunFam NifU-like protein 3, chloroplastic 88 170 - -
Trre3g02180 242 Gene3D - 88 170 IPR034904 -
Trre3g02180 242 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 91 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02180 Trre-Chr3 19531081 19533062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02180 - - gmx:100806364 372.859