Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02175 ATGGAACAGCCACCTTCAGACCCTCCGGTCACTGGCGCCAGCGAAGGCGAAACAAAAAGCAAAAATGCACTGAAACGTGAACTTAAGAACAAGCAGAGAGAAGAGGAGAAGAAGAAAAAGGAGGAGGAGAAAGCTAGAAAGGCTGCTGAATTGAAAAGTGCTAATGAGAACAAATCTGCACCAGCTGATGACGAAGATATGGATCCAACGCAATACTTGGAGAATAGGCTGAAGTACCTTGCAACTGAAAAGAAAGAAGGGAGAAACCCGTATCCACACAAATTCTATGTCACTTTGTCTATTGAACAATACATCAAGGAATATGGAAGTTTGAGCGAAGGGCAACACCTTGAAGATGTCTCCGTATCTTTGGCTGGCCGAATCATGCACAAACGTGCCTCTGGTGCAAAGCTTGTCTTCTATGATCTGCATGGTGGGGGTAAAAAGGTTCAGGTTATGGCCGATGCGAGTAAATCTGACTTGGATGAGGCTGAGTTTTCCAAATTCCATTCTAATGTAAAGCGTGGAGATATTGTTGGCATCACAGGGTTTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTATTTTCCCCAAAACTTTTGTGGTGTTGTCTCATTGTCTTCATATGTTGCCAAGACAAAAATCTGCGGCTGCTGCTGATAATGCAAATGTGAAGAAAACTGCATGGGTACCAGGCAGTACCAGGAATCCTGAAACATACATTTTGAAAGATCAGGAAACAAGATATCGGCTACGTCATTTGGACTTGATGCTTAACCCAGAGGTTCGAGAAATATTCAAGACAAGGTCTAGAATAATTTCTTACATTAGGAAGTTCCTAGACAATCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGTGCTGCTGCTCGACCATTTGTAACTCATCATAACGACCTTGACATGAGATTATTCATGAGAATTGCTCCAGAACTCTATTTGAAGGAGTTGGTGGTTGGTGGGCTGGACCGTGTTTATGAAATTGGGAAACAATTTAGGAATGAGGGTATAGACTTGACACATAATCCAGAGTTTACTACTTGTGAGTTCTATATGGCTTATATGGACTACAATGACGTAATGGATATAACAGAGAAAATGTTGAGTGGTATGGTCCATGAACTTACCAACGGCAGCTATAAAGTCAAGTATCATGCAGATGGGACTGACAAGGATCCCATTGAAATAGACTTCACTCCACCATTCAGAAGGATTGACATGATTGAAGGATTAGAGGAGATCGCTGGCCTCAATATTCCCAAAGACTTGTCAAGCGATGAAGCTAATCAATATTTGAAGGATGCATGCAAGAAGTTTGAAGTTGAATGTCCCCCTCCTGAAACAACTGCTCGTTTGTTGGATAAGCTTGTGGGACATTTTTTGGAGGAAACATGTGTCAATCCTACATTCCTCATAAACCAACCTGAGATAATGAGTCCTTTGGCAAAGTGGCACAGAGCAAGACCAGGCCTAACTGAACGTTTTGAATTGTTTGTTAACAAACGTGAGCTTTGCAACGCATATACTGAATTGAATGACCCTGTGGATCGGCAATCAGGTGATGATGAAGCAATGGCTGAAGATAAAACATTTATTACGGCTTTGGAGTATGGTTTGCCACCAACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACCATGTTATTAACTGATTCACAAAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGA 1764 0.4206 MEQPPSDPPVTGASEGETKSKNALKRELKNKQREEEKKKKEEEKARKAAELKSANENKSAPADDEDMDPTQYLENRLKYLATEKKEGRNPYPHKFYVTLSIEQYIKEYGSLSEGQHLEDVSVSLAGRIMHKRASGAKLVFYDLHGGGKKVQVMADASKSDLDEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMLPRQKSAAAADNANVKKTAWVPGSTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRSRIISYIRKFLDNLDFLEVETPMMNMIAGGAAARPFVTHHNDLDMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDVMDITEKMLSGMVHELTNGSYKVKYHADGTDKDPIEIDFTPPFRRIDMIEGLEEIAGLNIPKDLSSDEANQYLKDACKKFEVECPPPETTARLLDKLVGHFLEETCVNPTFLINQPEIMSPLAKWHRARPGLTERFELFVNKRELCNAYTELNDPVDRQSGDDEAMAEDKTFITALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02175 587 SUPERFAMILY Nucleic acid-binding proteins 67 211 IPR012340 -
Trre3g02175 587 PANTHER LYSYL-TRNA SYNTHETASE 18 587 - -
Trre3g02175 587 Gene3D - 70 212 IPR012340 -
Trre3g02175 587 Pfam tRNA synthetases class II (D, K and N) 244 583 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre3g02175 587 NCBIfam lysine--tRNA ligase 236 586 IPR002313 GO:0004824|GO:0005524|GO:0006430
Trre3g02175 587 FunFam Lysine--tRNA ligase 69 212 - -
Trre3g02175 587 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 266 585 IPR006195 -
Trre3g02175 587 Gene3D Bira Bifunctional Protein; Domain 2 240 587 IPR045864 -
Trre3g02175 587 Pfam OB-fold nucleic acid binding domain 122 199 IPR004365 GO:0003676
Trre3g02175 587 Hamap Lysine--tRNA ligase [lysS]. 75 586 IPR002313 GO:0004824|GO:0005524|GO:0006430
Trre3g02175 587 SUPERFAMILY Class II aaRS and biotin synthetases 244 584 IPR045864 -
Trre3g02175 587 MobiDBLite consensus disorder prediction 19 70 - -
Trre3g02175 587 FunFam Lysine--tRNA ligase 240 587 - -
Trre3g02175 587 Coils Coil 14 58 - -
Trre3g02175 587 MobiDBLite consensus disorder prediction 1 70 - -
Trre3g02175 587 PIRSF LysRS2 10 587 IPR034762 GO:0004824|GO:0005524|GO:0006430
Trre3g02175 587 PRINTS Lysyl-tRNA synthetase signature 344 361 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Trre3g02175 587 PRINTS Lysyl-tRNA synthetase signature 297 313 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Trre3g02175 587 PRINTS Lysyl-tRNA synthetase signature 479 495 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Trre3g02175 587 PRINTS Lysyl-tRNA synthetase signature 281 291 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Trre3g02175 587 PRINTS Lysyl-tRNA synthetase signature 326 339 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Trre3g02175 587 CDD LysRS_core 259 585 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Trre3g02175 587 CDD LysRS_N 121 256 IPR044136 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02175 Trre-Chr3 19447833 19454608 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02175 K04567 - gmx:100785660 1006.13