Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02168 ATGGAAGGTACTCTTTTCCCTAATAGACCAGTTTTTCCACTCCCCACTAAAAAACCAACCCAAACATTGAAATTCAAACCAACATTTTCACACACTCCACCACCACAAACACCATCACAAACACCACCTTCTTTTCATTTAGATTCTCTTCTTCATCATCTAAAACACATTTCTTCAACTCCTATAACAACTCACACACAAACACTTGTTGTTCCTCAACCCAACAACAGTACCCATTTTTCTTCTTTCCAAATTGAAACTGATGAAAATCTTCAAGAGGGTTATAGAAAACGACCCAGTTCGTTTTCTGTTGATTATAACCATTTTGAGGATGCAAAGTTTGTATTTTTATCTGATAAAGATAGGTTTATGTTGAATTCAATTGTTGGGTATTCTTTGAATGACTTGATTGAGTTTTTCAATTCTATGAAATTTGAATTACTTGAATCTGATATTACTAGTTTGTTGAAGGGTTTGGATCTTTCTGGGAATTGGGAAAGAGCTTTTTTGTTGTTTGAATGGGTTTGGTTGAATTTTGGGTCTGAAAATATGAGGGTAGATAATCAATCTGTTGAACTTATTGTTAAGATATTAGGTAGAGAATCACAGTATTCAATTGCATCTAAGCTGTTTGATATAATTCCTGTTGAAGAATATTCACTTGATGTTAAGGCTTGTACTACTGTTCTTCATTCTTATGCGAGAACCGGTAAGTATAAACGCGCTATAGAAATTTTTGACAAGATGAAGGAAACTGGTCTTGATCCAACTTTGGTTACTTATAATGTTATGCTTGATGTTTATGGCAAAATGGGTCGGTCTTGGGATAAAATTTTGGAGTTGTTGGATGAGATAAAGAGTAGAGGGCTTGAGTTTGATGATTTTACATGTAGTACTGTGATATCTGCTTGTGGGAGAGAGGGTATGCTTGATGAAGCAAGGAAGTTTTTAGATGATTTGAAATTGAATGGATATAAACCGGGAACCATTGCGTATAACGCTATGCTGCATGCTTTTGGGAAGGCTGGAGTATATATTGAGGCCTTGAACATCTTAAAAGAAATGGAGGATAATAATTGTGTGCCTGATGCTATTACTTACAATGAGCTTGTGGCGGTGTATGTAAGAGCTGGGTTTCATGATGAAGCTGCTGCTGTCATTGATAGAATGGCAAGCAAAGGAGTTATGCCGAATGCTATTACTTATACAACCGTGATAGATGCTTATGGTAAAGCGGATAACGAGGACAAGGCTTTAAAGGTGTTTGGTCAGATGAAGGAGTTGGGTTGTGTTCCTAATGTATGCACATACAATGCTGTTCTTGCAATGCTAGGCAAGAAGTCAAGATCAGAAGACATGATTAAGATTCTGTGCGACATGAAATTGAGTGGGTGTCCTCCTGATCGTGTAACGTGGAACACAATGCTTGCTGTATGTGGTGAGAAGGGTAACCAAAAGTATGTTAACCAGGTTTTAAGGGAAATGAAAACCTGTGGATTTGAGCCTGACAAAGACACATTCAATACATTAATTAGCGCCTATGGTAGGTGTGGATCCGAAGTTGATGTTGCAAAAATGTACGGGGAAATGGTTACGTCCGGCTTTACTCCATGCATAACAACTTACAATGCTCTTCTAAACGCTCTTGCTAGGCGAGGAGATTGGAAAGCGGCAGAATCCATCATTCTCGACATGAGGAACAACGGCTTTAAGCCGAACGAAACTTCGTACTCGCTTTTGCTTCATTGTTATTGCAAAGCTGGGAATGTCATGGGGATAGAGAAGGTTGAAAATGAAATTTACGATGGTCTTGTCTTTCCTAGTTGGACGCTTTTGAGAACCCTTGTCCTTACATACTACAAGTGCAGAGAGCTTCGGGGAATGGTACGGGCATTTCATCAGTTGCAAACGAATGGATACAAACTTGATATGGTTGTAGTCAATTCCATGCTTTCATTGTTTGTCCGAAACAAGAGGCTCGAGAATGTACATGAAATGCTAGATCTTATTCGCAATAATGGGTTGCAGCCAAATCTTGTGACCTATAATAGCTTAATAGATTTGTATGCTCGAGTCGGTGATTGTTGGAAAGCAGAAGAAATGCTCAAGGAAATTCAAAACTCCGGTCTGAATCCAGATGTTGTATCTTACAATACCGTCATCAAGGGTTTTTGTAGAAAAGGGCTCGTGCAAGAGGCTATCAGAATTCTTTCAGAGATGACCAATAATGGAATTCAACCGTGTCCTATTACATTCAATACTTTCTTGTCATGCTATGCAGGGAAGGGTCTTTTTGCTGAAGCAAATGAAGTCATTAGATATATGATTGAACATGGTTGCATGCCTAATGAGTTAACTTACAAGATTAAGGCCAACCTTGACAGAGTTCCAACAAAGATCAACCTGCATGAAAAAGCTATTTTCTGGCTGAATTCGAGAATGGCTCAGAGAAAGGAGGTCAAGGAAATTGGCAAACTCGCATGGCTTACCATCACACGGTCGATATGGATACAAATGAAGTGGTGGAGATGA 2532 0.3874 MEGTLFPNRPVFPLPTKKPTQTLKFKPTFSHTPPPQTPSQTPPSFHLDSLLHHLKHISSTPITTHTQTLVVPQPNNSTHFSSFQIETDENLQEGYRKRPSSFSVDYNHFEDAKFVFLSDKDRFMLNSIVGYSLNDLIEFFNSMKFELLESDITSLLKGLDLSGNWERAFLLFEWVWLNFGSENMRVDNQSVELIVKILGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHSYARTGKYKRAIEIFDKMKETGLDPTLVTYNVMLDVYGKMGRSWDKILELLDEIKSRGLEFDDFTCSTVISACGREGMLDEARKFLDDLKLNGYKPGTIAYNAMLHAFGKAGVYIEALNILKEMEDNNCVPDAITYNELVAVYVRAGFHDEAAAVIDRMASKGVMPNAITYTTVIDAYGKADNEDKALKVFGQMKELGCVPNVCTYNAVLAMLGKKSRSEDMIKILCDMKLSGCPPDRVTWNTMLAVCGEKGNQKYVNQVLREMKTCGFEPDKDTFNTLISAYGRCGSEVDVAKMYGEMVTSGFTPCITTYNALLNALARRGDWKAAESIILDMRNNGFKPNETSYSLLLHCYCKAGNVMGIEKVENEIYDGLVFPSWTLLRTLVLTYYKCRELRGMVRAFHQLQTNGYKLDMVVVNSMLSLFVRNKRLENVHEMLDLIRNNGLQPNLVTYNSLIDLYARVGDCWKAEEMLKEIQNSGLNPDVVSYNTVIKGFCRKGLVQEAIRILSEMTNNGIQPCPITFNTFLSCYAGKGLFAEANEVIRYMIEHGCMPNELTYKIKANLDRVPTKINLHEKAIFWLNSRMAQRKEVKEIGKLAWLTITRSIWIQMKWWR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Trre3g02168 843 Pfam Pentatricopeptide repeat domain 455 515 IPR002885 -
Trre3g02168 843 Pfam Pentatricopeptide repeat domain 221 271 IPR002885 -
Trre3g02168 843 Pfam Pentatricopeptide repeat domain 386 446 IPR002885 -
Trre3g02168 843 Pfam Pentatricopeptide repeat domain 632 689 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 292 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Trre3g02168 843 Gene3D Tetratricopeptide repeat domain 609 835 IPR011990 GO:0005515
Trre3g02168 843 Gene3D Tetratricopeptide repeat domain 274 427 IPR011990 GO:0005515
Trre3g02168 843 Gene3D Tetratricopeptide repeat domain 451 608 IPR011990 GO:0005515
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Trre3g02168 843 MobiDBLite consensus disorder prediction 1 44 - -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Trre3g02168 843 Pfam PPR repeat 295 324 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 748 782 IPR002885 -
Trre3g02168 843 Pfam PPR repeat family 537 586 IPR002885 -
Trre3g02168 843 Pfam PPR repeat family 712 757 IPR002885 -
Trre3g02168 843 Pfam PPR repeat family 327 368 IPR002885 -
Trre3g02168 843 Gene3D Tetratricopeptide repeat domain 126 273 IPR011990 GO:0005515
Trre3g02168 843 PANTHER OS03G0856100 PROTEIN 506 632 - -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 678 712 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 713 747 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Trre3g02168 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Trre3g02168 843 SUPERFAMILY HCP-like 233 429 - -
Trre3g02168 843 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 273 375 - -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 680 714 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 295 328 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 506 537 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 225 257 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 259 293 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 470 503 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 400 434 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 365 399 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 435 468 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 750 784 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 541 574 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 715 747 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 646 678 IPR002885 -
Trre3g02168 843 NCBIfam pentatricopeptide repeat 331 364 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02168 Trre-Chr3 19404688 19407862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02168 363 787 Glycosyltransferase AT1G05670 24.651 4.11e-48 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02168 K17710 - gmx:100803889 1165.98