Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02167 ATGGCTTGTTGCTCATTGCGACCAAGCCGTTTTTTGCAGTGTCGAGGTCCTTTTGCTAAGAGAAGGCATCCATTGGTGGACTCATCAGTAATTTCAGAAATTAGAAAATGCCTTGATGAAGGGGTTGAATTTCAAGGTGAATTGTTGAACTTCAGGAAAGATGGATCTCCATTTATGAACAGATTACGGCTCACACCTATATTTGGAGAAGATGATGAGATTACTCATGTTATTGGAATTCAGTTATTCACAGAGGCAAACATTGATCTTGGTCCTCTTCCTGGTTCTACAATTAAGGAATCTCTTAAATCATCTGGTCGGTTTCATTCTGTGCTTTCCTCATTGCACCCTCTTTCAGTGGGGGACCGAAATGTGACTCGTGGAATTTGTGGTATATTTCAATTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGACATTGCATCGGTTAGTTCTGTTTGTAGGCGATTGTATGAGGTAACAAGAAATGAAGACCTTTGGAGAATGGTATGCCAAAATGCATGGGGTAGTGAAACTACCCGTGTTTTGGAGACTGTTCCTGGTGCAAAGAGACTTGGATGGGGACGGCTAGCAAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGGTGTTGAACCCTCGCGCTGCAATTTTAGTGCTTGTGCAGTTGGAAATAGAGTTGTCCTATTTGGCGGTGAAGGAGTTAATATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATTCCAATAATCCGGAATGGCAGCATGTCCAAGTTAGCTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAACACAGGGCTTGCTCAATGATGTGTTTGTTCTGGACTTAGATGCAACCCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATAGTTTCCGGTGGCTGTGCTGATTCTGGAGTACTTTTGAGTGATACTTTCCTCCTTGATATGTCAATGGAAAACCCTGTCTGGAGGGAGATACCAGTAACATGGACACCACCTTCCCGTCTGGGCCACACACTATCTGTTTATGGTGGCAGGAAAATTCTGATGTTTGGAGGTCTGGCCAAGAGTGGGCCCCTGCGTTTCCGGTCAAGTGATGTGTTCACGATGGATTTAAGTGAGGATGAACCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGCAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCTGTTAGCCTTCCAGGTGGTAGAATTTTGATTTTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACCGATGAGAAGCCTACATGGAGAATTCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTTCTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAACTGCATGAACTTTCCCTGGTAAATTCTGTCATCTAG 1635 0.4593 MACCSLRPSRFLQCRGPFAKRRHPLVDSSVISEIRKCLDEGVEFQGELLNFRKDGSPFMNRLRLTPIFGEDDEITHVIGIQLFTEANIDLGPLPGSTIKESLKSSGRFHSVLSSLHPLSVGDRNVTRGICGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYEVTRNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDATPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLVNSVI 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02167 544 Gene3D - 130 176 - -
Trre3g02167 544 FunFam Putative LOV domain-containing protein 205 409 - -
Trre3g02167 544 SUPERFAMILY Kelch motif 215 433 IPR015915 GO:0005515
Trre3g02167 544 ProSiteProfiles SRCR domain profile. 146 189 IPR001190 GO:0005044|GO:0016020
Trre3g02167 544 Pfam Galactose oxidase, central domain 290 339 - -
Trre3g02167 544 SUPERFAMILY PYP-like sensor domain (PAS domain) 18 81 IPR035965 -
Trre3g02167 544 FunFam Adagio protein 1 129 176 - -
Trre3g02167 544 Gene3D - 433 543 IPR015915 GO:0005515
Trre3g02167 544 Pfam PAS domain 27 80 IPR000014 -
Trre3g02167 544 SUPERFAMILY F-box domain 123 193 IPR036047 GO:0005515
Trre3g02167 544 Pfam F-box-like 140 178 IPR001810 GO:0005515
Trre3g02167 544 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 7 541 - -
Trre3g02167 544 Gene3D - 205 432 IPR015915 GO:0005515
Trre3g02167 544 Pfam Galactose oxidase, central domain 228 278 - -
Trre3g02167 544 Coils Coil 543 544 - -
Trre3g02167 544 FunFam Putative LOV domain-containing protein 410 543 - -
Trre3g02167 544 Pfam Kelch motif 385 436 IPR011498 GO:0005515
Trre3g02167 544 Pfam Kelch motif 452 499 IPR011498 GO:0005515
Trre3g02167 544 Gene3D PAS domain 5 92 - -
Trre3g02167 544 CDD F-box_AtADO-like 131 177 - -
Trre3g02167 544 SMART pac_2 45 86 IPR001610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02167 Trre-Chr3 19392550 19394429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02167 267 523 Acyl Lipid Metabolism Gene Families AT3G05420 25.448 2.97e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02167 K12115 - gmx:100802828 1021.54