Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02015 ATGCCACCAGCACGAGAGCTTCCAGGGTTCTACTTTGACCCAGTGAAGAACAGGTATTTTCCGATCAAAGGTCCCATTCCCGGCTCTTCTTCTTCTTCTTCTAAGTCCAAAATCACTACTCCAAAACCTTCACAAACCTCGTCTTCTCAGTTACAGGAAAAGAAAAATAGGAGTTCTTGCAGGAAGCTTAGAAACAGAATGTCTAAACTCCTTCAGATTCGGGAGTTAGATGGTCGTCATGTTAATGCTTCACACTATTGCAAGTGTAACTTCACTGAGGAATTTCGGAAAATACAAACATCTCAACCTAACGTTTGGAAGTATCAGGGAACTGATAGGATAGGTATTAGTGCTTTGGAACACTTAAATGTTGATGTGCAGACAGTAGATGGTAGATTTCGAACTGATGTTTTATTGAATGGCAGCATAAATGGATCACTGAGTTTTTCTGAAGTTGGAAGGATTGGGCATAATTTTGATGATGGGGTAAAGTGGATGCCAGATTGTGTGAAGAGTCATATTAAAGGGGAAACGAATGTGCATAACGAGGTGCCAGGGCCGCTTTTCAGACCTAATGGAGCTTCACTGTTTATGTCGTCAAGAATATCTTGTATAAGATTGGGTCCAAATTTATCTCCTCATGCTCCAAATGACAGTCCAATTGTTGGAAATGTGTTATTTACTACACTGGGATCAGAAACATCAGGTGGATCTGTTTATACTATCAGTCTTGTTGAGCCAATCGATCTCGGGCAAGGAATACTTAATACATGGAGTAGACTAGAGGAAATAACTTCTTTCAAGTGTACCCTTTGGACAGCTGAATATGACTATAATAGACATCGGGCTATAATTGGTACTAATCAGGGAGGTGCTTTGGTGGATCTGGAAAGTGGGACAAGGTCATGGTTTTTACGTTGTAAAAGTGATGTTTTTGCACAACAGATTGTTGACTCAGGAAATGGGATTTTATGTGGACTCAGAAATGGGGCAGTTATCTCTGTAGATTTTCGAGAGAAAAGATTGCTTTCTAATAGACTTACTTTGCATAGGATACCACATGCATCTTCAGATAAGAAAGCTGGAAATTCTAACAAAGATTGGTTTAAGCTTGAAGGAAGCATATATCCTTCACATACCATTAAGATGCCTTCGTCTATATCCTGTTTGGCATCGCTTAAGTTTGACGATCAGTACTTCTTGGCAAGCTCCATGGATGGAACGATAAAGCTATACGACCGTCGCATGCTCCAGAGGGGTGCTGTTCAGTCTTATGAAGGGCACGTGAATTCCCATACTCAAATACAACTCGGTGTTGACCCAGATGAAAGATATGTTATGTCAGGCGGAGAGGATTGCAAGTTACGGATATGGAGTATTAAGTCTGGCGAATTGCTTTTGGAGGATAAGTTCTCTAATTCAGTTCTCTCCACTGTGTGCTATCAATCATTTAAAAGTAAATTTAATGCAGAGGAAGAATATCAATACACACACGACTCTTCTTTGGGTGCATGGCTTGGATCACACGAAGGACTATTTTATATGCGCTGGTTATGA 1557 0.4046 MPPARELPGFYFDPVKNRYFPIKGPIPGSSSSSSKSKITTPKPSQTSSSQLQEKKNRSSCRKLRNRMSKLLQIRELDGRHVNASHYCKCNFTEEFRKIQTSQPNVWKYQGTDRIGISALEHLNVDVQTVDGRFRTDVLLNGSINGSLSFSEVGRIGHNFDDGVKWMPDCVKSHIKGETNVHNEVPGPLFRPNGASLFMSSRISCIRLGPNLSPHAPNDSPIVGNVLFTTLGSETSGGSVYTISLVEPIDLGQGILNTWSRLEEITSFKCTLWTAEYDYNRHRAIIGTNQGGALVDLESGTRSWFLRCKSDVFAQQIVDSGNGILCGLRNGAVISVDFREKRLLSNRLTLHRIPHASSDKKAGNSNKDWFKLEGSIYPSHTIKMPSSISCLASLKFDDQYFLASSMDGTIKLYDRRMLQRGAVQSYEGHVNSHTQIQLGVDPDERYVMSGGEDCKLRIWSIKSGELLLEDKFSNSVLSTVCYQSFKSKFNAEEEYQYTHDSSLGAWLGSHEGLFYMRWL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02015 518 Gene3D - 265 509 IPR015943 GO:0005515
Trre3g02015 518 Pfam WD domain, G-beta repeat 378 413 IPR001680 GO:0005515
Trre3g02015 518 Pfam WD domain, G-beta repeat 422 459 IPR001680 GO:0005515
Trre3g02015 518 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 468 IPR001680 GO:0005515
Trre3g02015 518 MobiDBLite consensus disorder prediction 26 54 - -
Trre3g02015 518 SMART WD40_4 418 459 IPR001680 GO:0005515
Trre3g02015 518 SMART WD40_4 374 413 IPR001680 GO:0005515
Trre3g02015 518 SUPERFAMILY WD40 repeat-like 235 480 IPR036322 GO:0005515
Trre3g02015 518 MobiDBLite consensus disorder prediction 22 59 - -
Trre3g02015 518 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 1 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02015 Trre-Chr3 17702466 17714003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02015 398 470 Miscellaneous Gene Families AT5G08390 32.877 4.38e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02015 K11799 - gmx:100798753 724.931