Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02006 ATGTCTAAATCTTTCATTTTACATTCCCAAATTACCCTCACATTTATCTTCTATTTACTAATCTTATCCCCAAAATCATCTTCTTGTGTAAACATCACCGCTCTTTTATCCACTTACCCTGATTTATCTCAATTCACCGCCCTTCTCTCCGCCGCAACTTCCTTAACCACCGATCTCTCCCACCGTAATTCCCTCTCTCTCCTCGCCGTACCTAACTCATTTCTCTCCACTGACCCTAACCTCTCCCACCATCAACTCTCCTCCTCCGCTCTCTCCGACATCCTCCGCTACCACGTCCTCCTTCAATTCTTCTCATTGTCCGACCTCCACTCTCTTCCTCCCTCCGGTAAACTTGTCACCACTCTCTTCCAAACCACCGGTCGCGCCACCAATAATTTCGGTTCCGTTAACATCACTCACGATCCTCACTCCAATTTAATTTCGATCCATTCACCAGCACCTTATTCTTCATCAAACGCAACCCTAATTTCCCAAATCAAAACCCTACCTTATAATGTAACAATCTTCACCGTTAATTCTCTCTTAATCCCTTACGGTTTCGATCTAATGGCATCAGAAACTCGACCTAGTATTCGTCTCAATATAACTAAAACATTACTCGATGCTCATAATTTCAATATCATTTCTTCAATGCTTTTTGCTTCCGGTGTCGTTAACGAAATCGAAGCCGGTGAAGGTGGTTCTGGAATCACGTTATTTGTTCCGGTAGATAACGCTTTCGCTGATCTACCTTCTTCCGTTGCACTTCAATCACTTGCAGCGGCGCAAAAAATTGTTGTTCTTAAAGCTCATGTTCTTCGTGCTTATTATCCTCTAGGTTCACTTCAATCCACTGCGAATCCTTTGCAACCTACTCTTGCGACGGAATCCATGGGCGCCGGAAGTTTTACTTTGAACATTTCGACGTTTAATGGCTCCGTCGCAATTAATACTGGTGTTGTTCAAGGAGTAATTACTCAAACAGTTTTTGATCAAAATCCAATTGCAATTTTTGGTGTTAATAAAGTTTTATTGCCAAGAGAGATTTTTGGGAAAAATCCAATTTTGGCGCCTGTTGAAATTGCTGCTCCTCCTCCTTATGTTGATGCTAGTTCGCCGTCCGTGTTGGGCGAAGATTTGAGCTCGAATGTTGCTAGTGATTATTGCTCTGAGTTCTTTGTTTTTGTTCTTTGTTGTGTAAATTTGTATTTAATGATATAG 1221 0.4185 MSKSFILHSQITLTFIFYLLILSPKSSSCVNITALLSTYPDLSQFTALLSAATSLTTDLSHRNSLSLLAVPNSFLSTDPNLSHHQLSSSALSDILRYHVLLQFFSLSDLHSLPPSGKLVTTLFQTTGRATNNFGSVNITHDPHSNLISIHSPAPYSSSNATLISQIKTLPYNVTIFTVNSLLIPYGFDLMASETRPSIRLNITKTLLDAHNFNIISSMLFASGVVNEIEAGEGGSGITLFVPVDNAFADLPSSVALQSLAAAQKIVVLKAHVLRAYYPLGSLQSTANPLQPTLATESMGAGSFTLNISTFNGSVAINTGVVQGVITQTVFDQNPIAIFGVNKVLLPREIFGKNPILAPVEIAAPPPYVDASSPSVLGEDLSSNVASDYCSEFFVFVLCCVNLYLMI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02006 406 Gene3D FAS1 domain 22 184 IPR036378 -
Trre3g02006 406 Gene3D FAS1 domain 190 347 IPR036378 -
Trre3g02006 406 SUPERFAMILY FAS1 domain 28 185 IPR036378 -
Trre3g02006 406 SMART fasc_3 238 347 IPR000782 -
Trre3g02006 406 Pfam Fasciclin domain 211 346 IPR000782 -
Trre3g02006 406 ProSiteProfiles FAS1/BIgH3 domain profile. 29 182 IPR000782 -
Trre3g02006 406 SUPERFAMILY FAS1 domain 206 346 IPR036378 -
Trre3g02006 406 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11 374 IPR033254 -
Trre3g02006 406 FunFam fasciclin-like arabinogalactan protein 4 29 184 - -
Trre3g02006 406 ProSiteProfiles FAS1/BIgH3 domain profile. 199 344 IPR000782 -
Trre3g02006 406 FunFam Fasciclin-like arabinogalactan protein 4 200 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02006 Trre-Chr3 17603745 17604965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02006 - - psat:127138231 595.119