Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01712 ATGGAAGGTAACAAAGACGAAGCATTAAGATCAATTCGAATCGCAGAAGAAGCAATTGCTTCAGGTAACAAAGATCGCGCTCTCAAATTCATCAAAATCGCTCAGCGTTTAAACCGCGATTTACCGCTTGATTCCCTTTTAACTAAATGCGAAAATCTTGATTCTCAGTCCACGGCTTCTTTCTCCGGCGCCGGCACCTCACCGGGGAGGGATAAGCCTGGGAGAGTAAAAGAGGATGGTTTGAATGTAGACAAGAATTATACGGAAGAGAATGTTAAATTGATTAGGGAAATTAAAGGGAAAAGTGATTATTATTCGATTTTAGGGTTAGAGAAGAGTTGTTCTGTTGAAGAGATTAGGAAAGCTTATAGGAAATTGTCTTTGAAGGTTCATCCTGATAAGAATAAAGCACCGGGTTCGGAAGATGCGTTTAAGAAAGTTTCTAAGGCTTTTAAGTGTTTGAGTGATGATGGTTCTAGAAGGGATTATGATCAAGGAGGGTTGGTTGATGAATTTGATTCGAATTATAATCAGCAGCATAATCATTTTAGGCGAAGGAGGAGAAGGGGTACCACGGCTCATGATATTTTCGAAGATGAATTTGATCCTGATGAGATCTTTAGAGCTTTTTTTGGTCAATCGGATGCGTTTGGGCGGAGAAATCATGTTTATAGGACTCGGGGCGGTGGTGGTGGGATGGCTAGTCATCATCAGAGGCATGAGGTTCAGGGAGGACATTATCTTATGTTGTTGATTCAGCTTCTTCCATTGTTGCTAATTGTGTTGCTTGCTTACTTGCCCTTTTCGGATCCTGAATATTCCTTGCATAAAAACCAGTCCTACCAGATTCTAAAGGTTACTGAGGATTATGGGGTTCAGTTTTTCGTGAAATCTCAGGCATTTGATGCTAATTATCCGATTGGAAGTTCGGCTCGTGAGACCATTGAGGATAATCATGAAGCAAAAGCCACTTCAAGGATATTGTTTTCTTGGCTTGAGGAGTTCTTGTATCAATTGCTCAGCTTTTATGCACATCTTAATTCCTCGGGATGTATAATATACTGTAGGAGTAACCCTCGTCACAACAGGATTGCTACATTAGTTTCTGCCAGTCAAGTGACTTGCATTGCTGACCTTGCTGTGGTGTTTTTTTTTTCTCTATAA 1164 0.4064 MEGNKDEALRSIRIAEEAIASGNKDRALKFIKIAQRLNRDLPLDSLLTKCENLDSQSTASFSGAGTSPGRDKPGRVKEDGLNVDKNYTEENVKLIREIKGKSDYYSILGLEKSCSVEEIRKAYRKLSLKVHPDKNKAPGSEDAFKKVSKAFKCLSDDGSRRDYDQGGLVDEFDSNYNQQHNHFRRRRRRGTTAHDIFEDEFDPDEIFRAFFGQSDAFGRRNHVYRTRGGGGGMASHHQRHEVQGGHYLMLLIQLLPLLLIVLLAYLPFSDPEYSLHKNQSYQILKVTEDYGVQFFVKSQAFDANYPIGSSARETIEDNHEAKATSRILFSWLEEFLYQLLSFYAHLNSSGCIIYCRSNPRHNRIATLVSASQVTCIADLAVVFFFSL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01712 387 CDD DnaJ 103 156 IPR001623 -
Trre3g01712 387 ProSiteProfiles dnaJ domain profile. 103 167 IPR001623 -
Trre3g01712 387 SMART dnaj_3 102 159 IPR001623 -
Trre3g01712 387 Pfam Domain of unknown function (DUF1977) 269 316 IPR015399 -
Trre3g01712 387 Pfam DnaJ domain 103 164 IPR001623 -
Trre3g01712 387 PANTHER AT29763P-RELATED 1 323 - -
Trre3g01712 387 MobiDBLite consensus disorder prediction 57 81 - -
Trre3g01712 387 SUPERFAMILY Chaperone J-domain 99 170 IPR036869 -
Trre3g01712 387 PRINTS DnaJ domain signature 105 123 IPR001623 -
Trre3g01712 387 PRINTS DnaJ domain signature 123 138 IPR001623 -
Trre3g01712 387 PRINTS DnaJ domain signature 139 159 IPR001623 -
Trre3g01712 387 Gene3D DnaJ domain 100 222 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01712 Trre-Chr3 13905880 13909552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01712 95 165 Miscellaneous Gene Families AT1G16680 39.189 7.40e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01712 K09518 - gmx:100820432 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01712 3 13905880 13909552 Trre3g01712 3 13905880 13909552 ECH