Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01706 ATGATAGACCTCAAATACATATGGGTGCTAGTTTCAATCAATAGATACATTCTTGACACAATACAAGATGAAAAAACAAGAAAAACACTAAAAATGAGATGTATCTCAAACATAAAGATTCAAAGTCAAGAATTCTTTGAATTTTCTGACCAATCAGTCCTATCAAATCTCTATTATGGCATTGATAGTATTGAAACTGCAATAAAATCACATCATGAAGAAGAAAGATCTTTCAACTTAAACAATTCAGAACAAATGCTTCAAGTTCCAGCAATGCTTGATGAAGATGAATTCACAGCTACAATTCCAAATTATTATTTGGTTTGTTGTTCTTATTTTTATCTTTCAATGGTTAGAAAACTTCAAGGTGATGAATGGCAAGCTGCACTTCATTTTCTTCAAGCTGTTTTGGTTTCTCCAATGATTGTTTGGAATGAATTTGCACCTCAACTTTGTGAAAGTCTTTTTAAGAAAAATGGAAATAGAAGTTTAGAGTTTGTTTCTTCTTCGAATTCCGAAGAAGAAATTAATGAAGAATTTGTTAAGGAGAAAGCTAGGAGATATAAGGAGTGTTTGGTGTATTATCAAGTTATGCTTTATGGAGAAATTCCATGGTGGAGCAGTTATTGCAGCAAAAATTCAGCAAATTATATGGATGTATCAAATACTAGCTGTGTATCTTCTGCTTCAATTCAACATGAACACAGATTGAAAAATTGCAACACATATGAGAAGCTTCACCTAATGGATACTCAAGATGTGATGCAAGAAAAGTTGGATGTAAAAAACATAATTAATCTTGATTCTAGCAGATTCTCATTGTCCATTGAAGATTTTGCTTTATCAATCTCGAAACGAATAGAAAAAACAAGTATCAATTTAAATTGCCGCGTTGACGATTTATTAATCGAAGAAGCATTGCAACCATTAGAATTCCATCTTTTTGATCATGCAAGTAGTAAACATAGACTCGGTCCGAAATATCATGAAGAAAGTTCTAAGATGAAATTGCAAACATCATTAGAAAAATGTGGTGAAGAATATATTGTTAACACTGCATCGATTTTCGAGAGTTTGATTGGTTCGTCAGGCACAAATTATGGTTCCTTAAAGGATGTGATTTTGGATGAATTGTTAATAGTAATCTCAACTTCCAAAGAGGAAAAGGAACTTAGAGCATCGGTATCGATTCTTACAACAATCATTTCAAGGAACAAATCGATTATCGACGATGTGAAGAGAAAAGGTTTAAGGTTATGTGATTTAGCAAGTGCTCTAAAACAAAATGTTCATGAAGCAGTAATACTAATCTATCTGATAAATCCATCTCCTATCGATATAAAATCATTGGAACTTTTGCCGATATTAGTCGAAATCGTATGCAATTCGTCGCAAAATAGTTACAAAAGTAAACAAGAATCGGTTCTTATGACGCCTCATGCAGCATCATTGATGATCATAGAAGAACTTGTGACTGCATTTGACTATGCTACGAATAACATGCATTTGGAAATAATCAGTTCGCCTCATTTTCTCAGCGGACTTCTAGAAGTTGCTCGAAACGATAATCTTGAAGAGTTTTTCTCTTTGACTACTATTCTTATAAAGTGTATGCAGTTTGATTCACAATGCAGGAAGTATGTGTCACAGTTTAGTCCTCTTGCTCCTTTTCTAGACCTTTTACAGACAAAAGATATTCGCGCAAAATGCACCGCGCTCGAGTTTTTTCATGAAATCCTATGCATACCGAGATCATCGGCTATTAATTTGCTGCAGAGGATGAAGAAAGAAAGCCGAATGAATATTATGCAAATATTGATGCATTGTGCAAATCAATTACAGCCTAATCACCAGATTTTAGCTGCTAATATTATGATTCAGTTCGACACATTGAACCCTACCGATAAAAGCTTGTTTAGAGAAGAAGCTGTGAAGATTCTTGTAAGGTCATTGACATCTGAAGAAAGCTCGGAACAGATATTATCTGCGTCGATTCTATCAAATCTTGCTGGTACATATGCTTGGACAGGAGAATCGTATACAGCTGCATGGTGTCTGAAAAAGACAGGCTTGAACTCTCCTTATCACCAAAATATGATACGAAACTTCAACTGGTTGGATCTGAGTCTACAGGATACAAGCATAGATGTATGGTGCAGCAAAATTGCGAAATGTATCATAAGTGTTGGAGATTCAATCTTCTATAGTTTGGAGAAAGGACTAAGAAGCAAGATGAAAAAGGTTTCTAGAGATTGTCTTGTAACCATTTCATGGCTTGGATGTCAACTATCAAAAAGTCCGGAAAGCCTCAGTAATTCCGCATCCGAGATTATATTAAGAGGAATTGAGCAATTTTTGCATCCTGGAATGGAATTAGATGAAAGACTTTTGGCTTGTATGTGCATGTTTAATTATGCTTCTGGGAAAGGAAAGCAAAAACTAATGAATTTCTCAGAAGGAGTAAAAGAATCATTAAGACGTCTTTCGAGCATAATTTGGATGGCTGAGGAATTACATCGGGTAGCCGATTTCTTGCTCCCAAACACATCACGTATTTCTTGTGTTCATACGCAAATACTTGAGGTCGGTCGCAACTTTAGCGTATCAGTTTGCTCCCTCATATACTACAAGGGACTGTTATTCAGCGGATATTCAGACGGATCAATTAAGGTTTGGGATATTAGGGGGCACTCAGCTAGTCTTGTATGGGACATTAAACAGCACAAGAAGTCTGTAACATGCTTTACAATTTATGAACCATTAGACGGCCTTTTAAGCGGATCAACTGATAAAACCATAAGGGTATGGAAAATGATTCAAAGAAATCTTGAATGTCTTGAAGTTATAACCATGAAGGAACCGATCCATCATTTAGGCGCACATGGCGAGACAATTTTCGCAATTACTGAAAGACAAGGAGTAAAGCTTGTTAACAAATCAAGAGAGATAAGAGATATTTTCAAAGGTAAGCATGGAAAGTGCATGACAGTATCTCAGGGAAAGTTATATATTGGATGCACAGATTCAAGCATACAGGAGTATTCCGCGGCACACAATAGGGAAGTAGAAATCAAACCACCTACAAAAAGTTGGAGGAAGCAAAGCAAGCCTATAAATTCAGTTGTAGTCTATAGAGATATGCTCTATAGTGCAAGTAAGCATGTTGAAGGAACAACAATCAAGGAATGGAAAAGATGTGGCAAACCCAAAATTTCATTTCTTAATGACAAAGGAGATAATGTGGTAGCCATGGAAGTGGCAGAAGACTTCTTATACCTAATCTCTAGCTCATCAGCAAACAACATTCAGATTTGGTTGAGAGGAGTACCAAAAAAGTTGGGGAGAATGTCAGCAGGGAGCAAGATAACAAGCATCTATGCTGCCAATGATATTATTTTTTGTGGTACTGAGAAGGGATTAATCAAGGGCTGGATTCCTCTGTAA 3444 0.3586 MIDLKYIWVLVSINRYILDTIQDEKTRKTLKMRCISNIKIQSQEFFEFSDQSVLSNLYYGIDSIETAIKSHHEEERSFNLNNSEQMLQVPAMLDEDEFTATIPNYYLVCCSYFYLSMVRKLQGDEWQAALHFLQAVLVSPMIVWNEFAPQLCESLFKKNGNRSLEFVSSSNSEEEINEEFVKEKARRYKECLVYYQVMLYGEIPWWSSYCSKNSANYMDVSNTSCVSSASIQHEHRLKNCNTYEKLHLMDTQDVMQEKLDVKNIINLDSSRFSLSIEDFALSISKRIEKTSINLNCRVDDLLIEEALQPLEFHLFDHASSKHRLGPKYHEESSKMKLQTSLEKCGEEYIVNTASIFESLIGSSGTNYGSLKDVILDELLIVISTSKEEKELRASVSILTTIISRNKSIIDDVKRKGLRLCDLASALKQNVHEAVILIYLINPSPIDIKSLELLPILVEIVCNSSQNSYKSKQESVLMTPHAASLMIIEELVTAFDYATNNMHLEIISSPHFLSGLLEVARNDNLEEFFSLTTILIKCMQFDSQCRKYVSQFSPLAPFLDLLQTKDIRAKCTALEFFHEILCIPRSSAINLLQRMKKESRMNIMQILMHCANQLQPNHQILAANIMIQFDTLNPTDKSLFREEAVKILVRSLTSEESSEQILSASILSNLAGTYAWTGESYTAAWCLKKTGLNSPYHQNMIRNFNWLDLSLQDTSIDVWCSKIAKCIISVGDSIFYSLEKGLRSKMKKVSRDCLVTISWLGCQLSKSPESLSNSASEIILRGIEQFLHPGMELDERLLACMCMFNYASGKGKQKLMNFSEGVKESLRRLSSIIWMAEELHRVADFLLPNTSRISCVHTQILEVGRNFSVSVCSLIYYKGLLFSGYSDGSIKVWDIRGHSASLVWDIKQHKKSVTCFTIYEPLDGLLSGSTDKTIRVWKMIQRNLECLEVITMKEPIHHLGAHGETIFAITERQGVKLVNKSREIRDIFKGKHGKCMTVSQGKLYIGCTDSSIQEYSAAHNREVEIKPPTKSWRKQSKPINSVVVYRDMLYSASKHVEGTTIKEWKRCGKPKISFLNDKGDNVVAMEVAEDFLYLISSSSANNIQIWLRGVPKKLGRMSAGSKITSIYAANDIIFCGTEKGLIKGWIPL 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01706 1147 Gene3D - 369 832 IPR011989 -
Trre3g01706 1147 Gene3D - 845 995 IPR015943 GO:0005515
Trre3g01706 1147 SMART WD40_4 1067 1106 IPR001680 GO:0005515
Trre3g01706 1147 SMART WD40_4 980 1015 IPR001680 GO:0005515
Trre3g01706 1147 SMART WD40_4 898 937 IPR001680 GO:0005515
Trre3g01706 1147 SMART WD40_4 853 893 IPR001680 GO:0005515
Trre3g01706 1147 Gene3D - 998 1146 IPR015943 GO:0005515
Trre3g01706 1147 PANTHER OS04G0584500 PROTEIN 2 846 - -
Trre3g01706 1147 ProSiteProfiles Trp-Asp (WD) repeats profile. 905 938 IPR001680 GO:0005515
Trre3g01706 1147 SUPERFAMILY WD40 repeat-like 858 1143 IPR036322 GO:0005515
Trre3g01706 1147 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 902 IPR001680 GO:0005515
Trre3g01706 1147 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 905 938 - -
Trre3g01706 1147 SUPERFAMILY ARM repeat 506 809 IPR016024 -
Trre3g01706 1147 ProSitePatterns Trp-Asp (WD) repeats signature. 880 894 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01706 Trre-Chr3 13832793 13838955 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01706 - - mtr:25488113 1974.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01706 3 13832793 13838955 Trre3g01706 3 13832793 13838955 ECH