Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01703 ATGGAGGCAGTTGAACCACAATCACTCAAGAAGCTTAGTTTGAAGTCCCTCAAACGTGCCCTCGATCTCTTCTCTCCTCTTCATCAACAACTCGCTCCTCCTGATCCCGAAAGCAAGAAGATTCGTGTTAGTTATAAGGTAAACGCTGAGTATGGTGGAATTAAAAGCACGACTCAACCTCCGCAACAGACGAATTCTGCTACAAAGAATCAGTCTCAACAAGCAGGGTCTTCTAACATGCTTGCTCTTACAGGTCCAGGAGATTCCAAAGATCTCCAGAAAGGAGGGGCCCAAAATGCTTTGGTTGTTGGTCCATCCATGCCATCCACTGCTGCGAATGGTCATGGTTTCCAGGGCAAGAATACAGTAGTTGTTTCTACCTCTGGCTCATCTGAAAGGAATTTCTCAACTTCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGACCTGCTTGGCATGCACCATGGAAAAACTACAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAGTTGATCCCAGTAATACATGGTTTGCTACTGGTTCTGCAGATCGAACTATCAAGATATGGGACTTGGCAAGCGGTGTTCTAAAGCTCACATTAACAGGTCACATCGAACAAGTAAGAGGCCTTGCTATTAGCAACAAACATACTTACATGTTTTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAACAAGGTTATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTATTCATCCCACAATTGACATTTTACTTACTGGAGGACGTGATTCTGTCTGCCGGGTCTGGGACATACGTAGTAAAATGCAGATTCACGCTCTTTCAGGTCACGAGAATACTGTCTGCTCTGTGTTTACACGGCCAACGGACCCTCAAGTTGTCACTGGTTCTCATGATTCTACAATCAAGATGTGGGACCTTAGATATGGTAAAACAATGTTAACTCTTACAAACCATAAAAAGTCTGTTCGAGCAATGGCTCCACATCCTAAAGAGCAAGCTTTTGCATCTGCATCGGCTGATAATATTAAAAAGTTCACCCTTCCAAAAGGAGAATTTTGTCACAATATGCTCTCTCAACAGAAAACTATTATCAATGCAATGGCTGTCAATGAGGAGGGTGTTATGGTTACCGGAGGTGACAATGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAATCCCAAACAATTGTACAACCTGGTTCACTGGATAGTGAAGCTGGTATTTATGCTTTAACCTATGATATCACGGGCACGCGGCTTATATCATGCGAAGCTGACAAAACCATAAAAATGTGGAAAGAAGATGAAAATGCCAGTGAAGAAACACATCCCCTTAACTTCAGGCCTCCTAAAGACATCCGTCGATTCTAG 1434 0.4344 MEAVEPQSLKKLSLKSLKRALDLFSPLHQQLAPPDPESKKIRVSYKVNAEYGGIKSTTQPPQQTNSATKNQSQQAGSSNMLALTGPGDSKDLQKGGAQNALVVGPSMPSTAANGHGFQGKNTVVVSTSGSSERNFSTSALMERMPSKWPRPAWHAPWKNYRVISGHLGWVRSVAVDPSNTWFATGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAISNKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLAIHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHENTVCSVFTRPTDPQVVTGSHDSTIKMWDLRYGKTMLTLTNHKKSVRAMAPHPKEQAFASASADNIKKFTLPKGEFCHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALTYDITGTRLISCEADKTIKMWKEDENASEETHPLNFRPPKDIRRF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01703 477 MobiDBLite consensus disorder prediction 53 84 - -
Trre3g01703 477 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Trre3g01703 477 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Trre3g01703 477 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 282 - -
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 163 199 - -
Trre3g01703 477 Gene3D - 142 477 IPR015943 GO:0005515
Trre3g01703 477 SMART WD40_4 282 321 IPR001680 GO:0005515
Trre3g01703 477 SMART WD40_4 416 454 IPR001680 GO:0005515
Trre3g01703 477 SMART WD40_4 366 404 IPR001680 GO:0005515
Trre3g01703 477 SMART WD40_4 198 237 IPR001680 GO:0005515
Trre3g01703 477 SMART WD40_4 240 279 IPR001680 GO:0005515
Trre3g01703 477 SMART WD40_4 156 195 IPR001680 GO:0005515
Trre3g01703 477 SMART WD40_4 324 362 IPR001680 GO:0005515
Trre3g01703 477 MobiDBLite consensus disorder prediction 53 94 - -
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Trre3g01703 477 MobiDBLite consensus disorder prediction 456 477 - -
Trre3g01703 477 SUPERFAMILY WD40 repeat-like 153 454 IPR036322 GO:0005515
Trre3g01703 477 ProSitePatterns Trp-Asp (WD) repeats signature. 308 322 IPR019775 -
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 242 - -
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 204 IPR001680 GO:0005515
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 323 - -
Trre3g01703 477 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 330 IPR001680 GO:0005515
Trre3g01703 477 Pfam WD domain, G-beta repeat 158 195 IPR001680 GO:0005515
Trre3g01703 477 Pfam WD domain, G-beta repeat 242 279 IPR001680 GO:0005515
Trre3g01703 477 Pfam WD domain, G-beta repeat 203 237 IPR001680 GO:0005515
Trre3g01703 477 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515
Trre3g01703 477 FunFam Putative pleiotropic regulator 1 142 477 - -
Trre3g01703 477 CDD WD40 159 454 - -
Trre3g01703 477 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 288 IPR001680 GO:0005515
Trre3g01703 477 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 7 477 IPR045241 GO:0000398
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01703 Trre-Chr3 13818359 13824982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01703 244 453 Miscellaneous Gene Families AT5G08390 30.093 4.23e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01703 K12862 - gmx:100782357 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01703 3 13818359 13824982 Trre3g01703 3 13818359 13824982 ECH