Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01654 ATGGCATTTTTGTCTTTGAATCAGGAAATGATGGTGCTCGTTCTTCAATTTCTTGATGAAGAGAATTTGAAGGAGACATTGCACAAGATGGAACAAGAAACTGGTATTTTCTTTAATCTAAAATATTTTGAAAAGAAAGTACTTGATGGTGACTGGGATGAGGTTGAAAAATACCTTTCTGGATTTACACATATCAACGATAATGCTTTCTCAATGAAAATGTATTTTGAGATAAGGAAGCAGAAGTACTACGAAGCTTTGGATAGAGATGATAAAATAAGGGTTGTTGAAATTCTGAAGAATGATTTGAAAATCTTTGCAACATATAGTGAAGCATTGTACAAGGAATTAACAAATCTTATAACGCTTAACAATCTTAGGGAGAATATACAGCTATCACAATATCAAGATGTGAAATCAGCTAGAGTTTTATTGATGAGTGAGCTGAAAAATTTGATTAATGTTAACAATAGACTCAAAAATAAGCTTAAGCTTCCAACATTGAGTGAGTCACGGCTTCGACACTTGGTTAATCAAGGATTGAACTGGCAGCATGTTCTATGTAAAAATCCGCTGCAAAGTCCAGAAATTGCAACGATTTTAACTGATCATTCTTGCGATCCTCCACATCGAGAACATGATATACCGATTGCAGATATGCTTCCTGCACCACCAAATGCTGCAAATCATCCATCTTCTGCAATTGTACCATATCCATCAGCCCCTGTAGCTCCTAGGGCTAATGCTTTACCGGCATGGATGCTGAATGGAAATTCTTCCTCACCTTCTGGACCACTTGTTGCACTGACAGCTTCCGCATTGCCTGGTCCTTCGAATGAAGCCAACATTCCGAGGAGTACAAGAAGACCGATTACTCATCCACCGATGAATGATCAAGAAATAAGACGGATTCTGTTACCACAAACTTTCGAAGAGAGGGAAGAAGTTATTGCTATAGCTAGAAGCATTGAGAACAGAAGAAATTCAAATGATGTTTCGAAACCTTGGAAGTGTAAGGAAATTGTTCATCATACTCAGTGTCAAAGAGTTACTATGCTTGAGAGTATAGGACCTAGTAACAAGGTTTGTCTTCTATACACCAAACTTGGAACTGGTCTTCTAGCTCTTGGTTCGAAAGGGGTTATGAAGATGTGGAAATCGAACGTTACTCAATCCAATCCTACTGAAAAGGCGGCGACAAGTGTTGATCCTGAAGATTCCACCGTAACTAAGGGTATTTTTATGATTAATAATGTCCCGAACAATAAGGACGTGATTCCTTGCTTGGACATTTCAAAGAATGATGCTTTTGGCTTAGTTGCATGTGGAGGAATTGTTTCATTGTTCAACATGGATTCATCACATGATTATAAAGTAATGTATCAGTTTATGAGTCCTCCACCAGCAGCAACCTGCATTGCTTTCATGCCACAAGACAATAACATTGCTGCGATCGGAAGGGAAGATTATGTGATTCATATTTTCAATATGAGGCACGGCGAGCTCGTAGCAGAATTGAAGGGTCATCAAAAGTACATTACTAGTATAGCTTTTTCGCTTCGACAGAATATAATGGTTTCTGCCGGCGCTGATGCTCAGCTTATATCTTGGAACATGAACCAATGGTCTATGAATAAATCGGTGTCGATCCAAATGCCAACCGGTGAAAATGCGGCTCCAAGTGAAACTAAAGTTCAATTTCACAGTGATCAAGTGATGTTGTTAGCATGTCATGAAACACAGATAACTATATATAATGCTTCGAACATGAAACCGATTTGTCAGTGGTTGCCACAAGATGAGCTGCAAGGTTGTGCAATAACCTCTGCAACCTACTCGAGCAATTTCGGACAAATTTATGCGACATTTACTGATGGAAACATCGGAATATTTGATGCTGGAAGCCTCATACTATTATGTCGTATCGCTTCATCTGCATACCTATATCAGACTCCATCAACCAGCCAAAATGTGTACCCTCTTGTTGTTGCTGCAAATCCAAAACAGCCTAATCAATTTGCAATTGCACTATCAGATGGGACTATTAAGGTTTTTGAGCCCAATGAGTCGGAAAAATGGTTTTGA 2085 0.388 MAFLSLNQEMMVLVLQFLDEENLKETLHKMEQETGIFFNLKYFEKKVLDGDWDEVEKYLSGFTHINDNAFSMKMYFEIRKQKYYEALDRDDKIRVVEILKNDLKIFATYSEALYKELTNLITLNNLRENIQLSQYQDVKSARVLLMSELKNLINVNNRLKNKLKLPTLSESRLRHLVNQGLNWQHVLCKNPLQSPEIATILTDHSCDPPHREHDIPIADMLPAPPNAANHPSSAIVPYPSAPVAPRANALPAWMLNGNSSSPSGPLVALTASALPGPSNEANIPRSTRRPITHPPMNDQEIRRILLPQTFEEREEVIAIARSIENRRNSNDVSKPWKCKEIVHHTQCQRVTMLESIGPSNKVCLLYTKLGTGLLALGSKGVMKMWKSNVTQSNPTEKAATSVDPEDSTVTKGIFMINNVPNNKDVIPCLDISKNDAFGLVACGGIVSLFNMDSSHDYKVMYQFMSPPPAATCIAFMPQDNNIAAIGREDYVIHIFNMRHGELVAELKGHQKYITSIAFSLRQNIMVSAGADAQLISWNMNQWSMNKSVSIQMPTGENAAPSETKVQFHSDQVMLLACHETQITIYNASNMKPICQWLPQDELQGCAITSATYSSNFGQIYATFTDGNIGIFDAGSLILLCRIASSAYLYQTPSTSQNVYPLVVAANPKQPNQFAIALSDGTIKVFEPNESEKWF 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01654 694 SMART ctlh 36 94 IPR006595 -
Trre3g01654 694 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 94 IPR006595 -
Trre3g01654 694 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Trre3g01654 694 Gene3D - 552 693 IPR015943 GO:0005515
Trre3g01654 694 SMART Lish 6 38 IPR006594 GO:0005515
Trre3g01654 694 ProSiteProfiles LIS1 homology (LisH) motif profile. 6 38 IPR006594 GO:0005515
Trre3g01654 694 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 325 692 IPR027728 GO:0006355
Trre3g01654 694 Gene3D - 321 551 IPR015943 GO:0005515
Trre3g01654 694 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 540 - -
Trre3g01654 694 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 547 IPR001680 GO:0005515
Trre3g01654 694 SUPERFAMILY WD40 repeat-like 418 689 IPR036322 GO:0005515
Trre3g01654 694 Coils Coil 142 162 - -
Trre3g01654 694 SMART WD40_4 499 538 IPR001680 GO:0005515
Trre3g01654 694 SMART WD40_4 589 632 IPR001680 GO:0005515
Trre3g01654 694 SMART WD40_4 456 496 IPR001680 GO:0005515
Trre3g01654 694 SMART WD40_4 652 686 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01654 Trre-Chr3 13255554 13259895 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01654 - - tpra:123886597 1006.13