Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01648 ATGGGTGTTTTTGCTTTTGATGATGATTTCGTTTCAACTATTGCTCCACCTAAACTATACAAAGCTCTTGCAAAAGATGCCGACGAAATCGTCCCAAAGGTGATTCCAGTTATCCAGCCTGTTGAAATTGTTGAAGGAAATGGTGGACCTGGAACCATCAAGAAGCTAACTGTTGTTGAAGATGGCAAAACTACCTTTATTCTACACAAAGTAGAAGCAGTGGATGAGGCAAACTTGGGATACAACTACAGTTTAATTGGAGGAACAGGGTTGGATGAAAGTTTAGAGAAAGTTGAATTTGTGACAAGTGTTGTAGCAGGATCTGATGGTGGATCCATTGTTAAGATTTCAGTGAAATACCACACTAAAGGTGATGCAACTCTATCTGATGCAGTTCGTGAGGAAACTAAGGGCAAAGGAACTGGACTTCTTAAGGCTGTTGAGGGTTATGTTTTGGCCAATCCTGATTACTAA 474 0.403 MGVFAFDDDFVSTIAPPKLYKALAKDADEIVPKVIPVIQPVEIVEGNGGPGTIKKLTVVEDGKTTFILHKVEAVDEANLGYNYSLIGGTGLDESLEKVEFVTSVVAGSDGGSIVKISVKYHTKGDATLSDAVREETKGKGTGLLKAVEGYVLANPDY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01648 157 Gene3D - 2 157 IPR023393 -
Trre3g01648 157 SUPERFAMILY Bet v1-like 3 157 - -
Trre3g01648 157 PANTHER - 1 156 - -
Trre3g01648 157 Pfam Pathogenesis-related protein Bet v 1 family 2 153 IPR000916 GO:0006952
Trre3g01648 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Trre3g01648 157 FunFam Major pollen allergen Bet v 1-A 1 157 - -
Trre3g01648 157 CDD Bet_v1-like 6 151 - -
Trre3g01648 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Trre3g01648 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Trre3g01648 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Trre3g01648 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Trre3g01648 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Trre3g01648 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Trre3g01648 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01648 Trre-Chr3 13207238 13208478 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01648 - - gmx:100500525 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01648 3 13207238 13208478 Trre3g01648 3 13207238 13208478 ECH