Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01618 ATGGGCTCTTACAAAAAGTTAATAACATTCATGTTATTAATTTTTATAGTGATTACATTAAGTGAAGGAAGAGTACCCTTTGCATGTGACCCAAATAATGGTTTAACAAGAGGGTATAGATTTTGCAATACAAGAGTGCCAATTCATGTTAGAGTACAAGACCTTATAGGAAGACTTACATTGCCTGAAAAAATAAGGCTTGTTGTCAACAATGCAATTGCTGTTCCAAGACTTGGAATACAAGGCTATGAGTGGTGGTCGGAAGCTTTACATGGTGTTTCGAATGTGGGCCCCGGTACTAAATTTGGCGCAGCCTTTCACGCCGCCACTAGCTTCCCTCAAGTTATCACCACTGCTGCTTCTTTCAATCAATCTTTGTGGCTTGAAATTGGTCGGATTGTATCCGATGAAGCAAGAGCAATGTACAATGGTGGAGCAGCAGGATTGACATTTTGGAGTCCTAATGTGAATATTTTTCGTGACCCGCGGTGGGGCCGTGGCCAGGAGACACCTGGCGAAGACCCCACCTTGTCTGCGAAATATGCCGCTAGCTATGTTCAAGGACTACAAGGCAACGGCGCGGGTAACCGCCTCAAGGTTGCTGCTTGTTGTAAACATTACACTGCCTATGATCTTGATAATTGGAATGGTGTAGATAGATTCCATTTCAATGCCAAGGTGAGTAAACAGGACTTGGCTGACACATACGACGTACCATTCAAAGCGTGTGTGACGCAAGGAAAGGTGGCGAGTGTAATGTGTTCCTACAATCAGGTCAATGGCAAGCCCACTTGTGCTGATCCCGAACTCCTTCGCAACACCATCCGCGGTGAATGGGGCCTCAATGGGTACATTGTATCAGACTGTGATTCAGTTGGAGTTTACTACGACACCCAACACTACACGAGAACACCCGAAGAGGCAGCAGCAGCCGCGATTAAAGCGGGTTTAGATTTGGATTGTGGCCCATTTTTAGCCCTACATACTGATGGTGCTATTAAGCAAGGGCTTATGTCTGAAAATGATCTTAATCTTGCTTTAGCTAACCTTATTACTGTCCAAATGAGATTGGGAATGTTTGATGGTCCAGCCCAACCATATGGAAATTTGGGCACAAATATTGTTTGTTTACCAGCCCATAATGAAGTTGCAGTTGAGGCAGCTAGACAGGGTATTGTTCTCCTACAAAACAAAGGAAATGCATTGCCATTATCCCCTACAAGATCCCGCACCGTAGCAGTCATTGGACCTAATTCTGATGTTACTGAAACTATGATAGGGAACTATGCTGGTGTGGCGTGTGGTTATACGACGCCGTTGCAAGGGATTGCAAGATATGTGAGAACCCTCCATCAAGCAGGATGTGGGAACGTTGCTTGTGGTGGGAACCAATTATTTGGGGCTGCTGAGACAGTAGCAAGGCAAGCCGATGCGACGGTATTAGTAATGGGCCTAGATCAGTCCATAGAAGCAGAATTTAGAGACAGAGTTGGGCTTCTTTTACCAGGACACCAACAAGAGCTAGTGTCTAGAGTAGCTAGGGCTGCAAGAGGCCCAGTTATCTTGGTACTCATGTCTGGTGGGCCTATTGATGTTACATTTGCCAAAAATGATCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCTGGTCAATCTGGTGGTACTGCCATTGCTGATATCATCTTTGGTAGAACTAATCCTGGAGGAAGGTTACCAAATACATGGTACCCACAAAGTTATGTGGCCAAAGTACCAATGACAAACATGGACATGCGTCCAAATCCAGCAATAGGGTACCCAGGAAGAACCTATAGATTCTACAAAGGCCCAGTAGTTTTCCCATTTGGGCATGGACTAAGTTACTCAAGATTCACACATACCCTAGCACTTGCTCCAAAACAAGTCTCAGTCCAATTTACAACCTCTCATTCCCAAGCCTTCACAAACTCAAGTAACAAAGCAATGAAAGTGAGTCATGCAAAATGTGATGAGTTGGAATTAGGATTTCATGTTGATGTGAAAAATGAAGGGTCAATGGATGGTTCTCACACACTTCTAATTTTTTCAAAACCACCTAATGGTGTTAAACAATTGGTGAATTTTCATAAGACTTATGTTCATGCTGGATCAAAGACACGTGTTAAGGTTGGTGTTCATGTTTGTAACCATCTTTCTAGTGTGGATGAGTTTGGGGTTAGAAGAATCCCAATTGGTAAACATGAACTTGAAATTGGTGATCTCAAACATTCTCTTTTGGTTCAAACTTTGGACCAAATTAAACACTAA 2289 0.4338 MGSYKKLITFMLLIFIVITLSEGRVPFACDPNNGLTRGYRFCNTRVPIHVRVQDLIGRLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGAAFHAATSFPQVITTAASFNQSLWLEIGRIVSDEARAMYNGGAAGLTFWSPNVNIFRDPRWGRGQETPGEDPTLSAKYAASYVQGLQGNGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLADTYDVPFKACVTQGKVASVMCSYNQVNGKPTCADPELLRNTIRGEWGLNGYIVSDCDSVGVYYDTQHYTRTPEEAAAAAIKAGLDLDCGPFLALHTDGAIKQGLMSENDLNLALANLITVQMRLGMFDGPAQPYGNLGTNIVCLPAHNEVAVEAARQGIVLLQNKGNALPLSPTRSRTVAVIGPNSDVTETMIGNYAGVACGYTTPLQGIARYVRTLHQAGCGNVACGGNQLFGAAETVARQADATVLVMGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVILVLMSGGPIDVTFAKNDPKISAILWVGYPGQSGGTAIADIIFGRTNPGGRLPNTWYPQSYVAKVPMTNMDMRPNPAIGYPGRTYRFYKGPVVFPFGHGLSYSRFTHTLALAPKQVSVQFTTSHSQAFTNSSNKAMKVSHAKCDELELGFHVDVKNEGSMDGSHTLLIFSKPPNGVKQLVNFHKTYVHAGSKTRVKVGVHVCNHLSSVDEFGVRRIPIGKHELEIGDLKHSLLVQTLDQIKH 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01618 762 Gene3D - 51 368 IPR036962 GO:0004553|GO:0005975
Trre3g01618 762 Pfam Fibronectin type III-like domain 695 747 IPR026891 -
Trre3g01618 762 Pfam Glycosyl hydrolase family 3 N terminal domain 105 322 IPR001764 GO:0004553|GO:0005975
Trre3g01618 762 SMART Fn3_like_2 684 749 IPR026891 -
Trre3g01618 762 PRINTS Glycosyl hydrolase family 3 signature 112 131 IPR001764 GO:0004553|GO:0005975
Trre3g01618 762 PRINTS Glycosyl hydrolase family 3 signature 274 292 IPR001764 GO:0004553|GO:0005975
Trre3g01618 762 PRINTS Glycosyl hydrolase family 3 signature 200 216 IPR001764 GO:0004553|GO:0005975
Trre3g01618 762 FunFam probable beta-D-xylosidase 7 51 366 - -
Trre3g01618 762 SUPERFAMILY (Trans)glycosidases 40 391 IPR017853 -
Trre3g01618 762 PANTHER SUGAR HYDROLASE-RELATED 18 751 IPR044993 GO:0009044|GO:0045493
Trre3g01618 762 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 392 625 IPR036881 GO:0004553|GO:0005975
Trre3g01618 762 Gene3D Immunoglobulins 646 762 IPR013783 -
Trre3g01618 762 Pfam Glycosyl hydrolase family 3 C-terminal domain 392 622 IPR002772 GO:0004553|GO:0005975
Trre3g01618 762 Gene3D - 378 623 IPR036881 GO:0004553|GO:0005975
Trre3g01618 762 FunFam probable beta-D-xylosidase 2 377 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01618 Trre-Chr3 12891807 12898506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01618 6 755 Glycoside Hydrolase AT5G49360 71.879 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01618 - - gmx:100812823 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01618 3 12891807 12898506 Trre3g01618 3 12891807 12898506 ECH