Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01617 ATGAATTATTCCAAATGGATTTTTTTCCTATTAACAATTTCAACAATATTATCACTAGGAATTTCAGAATCATCAGTGAAACCATTGGTGAAAATAGTAAAAGGAAAGAAATTATGTGACAAAGGTTGGGAATGTAAAGGTTGGTCAGTGTATTGTTGTAATGAAACAATTTCTGATTATTTGCAAACATATCAATTTGAGAATTTGTTCTCAAAGAGAAATGATCCTGTTGCACATGCTGTTGGATTTTGGGATTATCATTCTTTTATTACTGCTGCTGCACTTTATGAACCTCTTGGATTTGGTACTTCTGGTGGAAAACATGGTGGTCAAAAAGAGGTTGCTGCTTTTCTTGGTCATGTTGGAAGCAAAACATCTTGTGGTTATGGGGTGGCTACAGGGGGACCCTTTGCTTGGGGCTTATGCTATAATAAAGAATTAAGTCCTGATAAATTCTATTGTGATGAATACTACAAATTAACCTATCCATGTAGTCCTGGTGCAGCATACTATGGCCGTGGTGCCATACCAATTTACTGGAATTACAATTATGGAAAAATAGGAGAAGCCTTAAAAGTGGATCTATTAAACCATCCAGAATACATAGAACAAAATGCAACATTAGCATTCCAAGCAGCATTATGGAAATGGATGACACCACCTGAAAAACACATACCTTCACCACATGATGTTTTTGTTGGAAATTGGAAACCAACAAAAAATGACACATTATCCAAAAGGGTACCTGGATTTGGTGCCACAATTAATATTTTATATGGTGATCAAGTTTGTGGCCAAGGTTCTGATAATGAATCAATGAATAATATAATTTCTCATTATCTTTATTACCTTGATTTGTTAGGAGTTGGTAGAGAAGAGGCAGGGCCTAATGAAATTCTTTCTTGTGCTGAACAAGCTGCTTTTAAACCATCTGGATCACCTTCTTCTTCAACAACTTGA 960 0.3531 MNYSKWIFFLLTISTILSLGISESSVKPLVKIVKGKKLCDKGWECKGWSVYCCNETISDYLQTYQFENLFSKRNDPVAHAVGFWDYHSFITAAALYEPLGFGTSGGKHGGQKEVAAFLGHVGSKTSCGYGVATGGPFAWGLCYNKELSPDKFYCDEYYKLTYPCSPGAAYYGRGAIPIYWNYNYGKIGEALKVDLLNHPEYIEQNATLAFQAALWKWMTPPEKHIPSPHDVFVGNWKPTKNDTLSKRVPGFGATINILYGDQVCGQGSDNESMNNIISHYLYYLDLLGVGREEAGPNEILSCAEQAAFKPSGSPSSSTT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01617 319 PIRSF Endochitinase 2 309 IPR016283 GO:0004568|GO:0005975
Trre3g01617 319 SUPERFAMILY Lysozyme-like 57 308 IPR023346 -
Trre3g01617 319 Pfam Chitinase class I 64 292 IPR000726 GO:0004568|GO:0006032|GO:0016998
Trre3g01617 319 Gene3D Endochitinase, domain 2 145 204 - -
Trre3g01617 319 PANTHER CHITINASE-RELATED 21 305 - -
Trre3g01617 319 FunFam Endochitinase (Chitinase) 144 204 - -
Trre3g01617 319 CDD chitinase_GH19 65 302 - -
Trre3g01617 319 Gene3D - 65 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01617 Trre-Chr3 12868920 12871104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01617 22 308 Glycoside Hydrolase AT3G16920 80.488 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01617 - - gmx:100805300 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01617 3 12868920 12871104 Trre3g01617 3 12868920 12871104 ECH