Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01605 ATGGCTTTGCAGAAGTATGTTCCTTCTGGCGATGCACCTGCTGTTAATTTGAAACATTTGAGTTTTTCTAGTAAGGTCCCTGAGAAAACTCAGTCTGATGTGGCAAATCAGAATCATGAGATGGATGTGGATGTTGACCTTAGGGAAGTTTATTTTCTCATTATGCACTTCCTTTCTGGCGGGCCGTGTCAAAAAACTTATTTACAGTTTAGGAATGAGCTTCTGGAGAATCAACTATTGCCTAGAAGGTATCATGCTTGGTATTCAAGGAGTGGGGCCTGCAGTGGTATTATACAAGATGATAGTCAATCATTCCCTTTAGGTTATGATAAGTTGGTGGAGAGGTATCCTCATATTGAAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTATTAAACAAAGCCTCCTTGTCACCAGGCTTGAGTACTGGAAATGCTCCAAATGCAGCTGATGTACCCACTCTTTTGGGAACGGGATCATTTTCACTTCTGAGCTATGACAGGGAGAAAGTGAATAAAGAAGTCAAACCGCCACCTCCTTATATGCGCTGGCCTCATATGAAAGCAAATCAGGTTCACGGGCTAAGTTTGAGGGAAATCGGGGGTGGTTTTCCAAGACATCACCGTGCACCGTCTATACGTGCTGCATGCTATGCCATTGCAAAACCTTCTACTATGGTCCAGAAGATGCAAAATATCAAGAGAGTTAGAGGACACCGTAATGCTGTTTATTGTGCTATACTTGATCGGTCAGGAAGATATGTTATTACTGGTTCAGATGACCGACTTGTAAAAATTTGGTCAATGGAAACTGCATATAGTTTGGCCAGTTGCCGTGGACACGATGGTGACATTACTGACTTGGCTGTGAGTTCAAACAATGCCGCAGTTGCATCCTCATCAAATGACTGCATTATTCGAGTTTGGCGCTTGCCAGATGGCTTACCAATATCAGTTTTGCGGGGGCATACTGGAGCTGTTACAGCGATAGCCTTTAGTCCCAGGCCTAATGCTGTTTACCAGCTTTTATCTTCCTCTGACGATGGAACTTGTAGGATATGGGATGCAAGAAATACCCAGTCAAGTCCAAGATTATATGTTCCAAGGCCTTCTGATTCTGGAAGGAGCAGCGGCCCATCCTCAAATACAATGCCACAAAATCATCAAATTTTTTGCTGTGCATATAATGCCAATGGAACTGTCTTCGTCACCGGTAGCTCTGATAATCTTGCCAGGGTCTGGAATGCTTGTAAACTTAATACGGAAGATCCTGACCAACCAAATCATGAGATAGATGTACTATCTGGTCATGAAAATGATGTAAACTATGTGCAATTTAGTGGATGTGCTGTAGCATCTCGATTTTCCACAACAGAAACTTGGAAGGAGGATAATATTCCCAAATTTAAGAATTCCTGGTTGAATCATGATAATATTGTTACCTGCTCTCGTGATGGAAGTGCTATTATATGGATCCCAAAATCACGCAGGTCTCATGGGAAAAGTGGTCGCTGGACACGGGCATATCATCTCAGAGTTCCACCTCCACCTATGCCTCCACAACCTCAGAGAGGTGGTCCACGCCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTAGACAACCGCTTTGTCCTTGCAGCTATTATGGATTGCAGAATCTGTGTATGGAATGCTTCTGATGGCAGCTTAGTGCACTCATTGACTGGGCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTTAATCCGCGGATAGCAATGAGTGCTGGATATGATGGAAGAACTATTGTATGGGATATATGGGAAGGCGTGCCTATCAGGATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAATTTTCTCCGGATGGGACATCAATTATACTATCTGATGATGTTGGTCAACTATATATATTAAACACGGGTCAAGGTGAATCCCAGAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGGCCTGTCATTCAAGACACACATGGTAATGTACTTGACCAGGAAACTCAGATGATCCCTTATCGACGTAATATGCAAGATTTACTTTGTGATTCAGCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAGCGGAGACGACTTGGATCTTTTGGCCAGGAATGGCGCCCGTCATCGCTAAAGTTTGCTATTGGCCCTGATTTCAATCTGGACCCAGAGTATCATATGGTTCCATTGGCTGACTTGGACATGGTTATAGAACCACCACCAGAGTTTATAGATGTTATGGATTGGGAGCCAGAAATTGATGTGTTTGCTAATGATACCGATTCAGAATATAATTTAACTGATGATAGTTCTTCTCGGGGTGAGAAAGGAGGTTCAAGCTCCAATGCCTCTGGTGATCCTGGTTCCAGCACAGATAACAGTGACAATGAGGACATTCACATGGATTCCATTCGTAGATCGAAGAGGAAAAAACAGAAGACCGGAATTGATATTACGACTTCTTCTGGGAGACGTGTTAAAAGGAGGAATTTGGATGAGTGTGAAGAAAATGTTCACAGTACTAGCCGAAGTAGGAAGGGAAAAGGTGGACGAAAAACATCAAGGAGGAAATCTTCTAAATCAAAATCTTCCAGACCTCAAAGAGCTGCTGCACGCAATGCTCTGAATTTATTCTCAAAAATTACAGGTGGACCAATTGAAGGAGAAGAAGATAGTTTGGTTGGTGATTCTTCAGATAGTGACTCAACATTGCAAGAGTCTAATATCGACAGTGAAGAATCTGGTAGAGCTTCCCAAAATGACCGACAGAATTATTCCAAGGGAAAGGAAGTTTTACTTTATGAATCAGAGGACACAAAATCTCACGAATTGACTGAGAGTCATGTAAACCGGAGAAGGTTGGTCCTGAAATTTCCAATTCGGGGTTCATCTAAACCCGCACATGATTTTGAGAACCAGGCTGGGTTGGTTGGCTCATCGTCAAAAACTGCTCAAGAATCCCCTGGTTTTAATGGGAACAACATACCAAGTTCTACAGAGCAAGGATATCGTTTTGGCAATGGAAGTTACTCTTCAATTGAAAGAACAGATCAAGTATATGTAGACTTACTAGAGAAAATTAGATGGGGGGAGGTTAGGGCTCGTTCATCTAAACCTCTCAGAGTGAGAGAAGCTGTGCCACCATGTGCAAATCCCAACTCTTTGAAATGTCCTAACCATCTCAATGAAAATGGAAATGTTAGTACTGGGCATGAGAAAGAGGACAAGGACTTTAGCAGTACATCAACCCCTGCTTTAGAAATCCAAAATGATGATAAGGTAGATAGTTTAACAGAAATAAATGAAAATTGTGCTGATTCTACCTCTCAGCCATTTAATCCTACTGGGAATGGTGAACCGCCACTCACAGCTTCCAGCAATTACACGGATCAAGATGAAACACTAGTTTCTGCAGGCATGACTCCGCAGGATACTATTCTTGTATCTGTCGGTCATAGTGGGGTTGACCAACTACCTGAACCAAATATTGGTTTTCCTCCTGTTTCAACAAAGCTGAGGTCTAAAAGGGGTACGAGGAATCCTGAAAGTCCATGTAAGCATGACACAAAATCATCGGTGCTAAAGAATATTGCATCTAGCTGTAATGCTGATAATAATTTGAACAATGAAGAGCATGTGGTTGTGGTTAAGGATGACAACAATACTAGACTAACATCTAATCAGAGAGAAAATGATTCTCAAGAAGTTGATGCTCAGGCTAAACAAGTTAGTACTTCACATGATTCACTAGAACCACATTCAAATAGAGATAAAATGTTCAAAGCTGTTTATAGAAGATCAAGATCACATAAGGCTGTGACTAATGGCAGTGGCATGGGAGAATCCACTTCAAATGGGAGCAACAGTAAACTTAATGTGGCAGTAGACAGTAATGGCACAAATGAAGCTCTTCATACCAATGGTTCGCTAGAGTTGGAACTAGGTACTCGCATCCCAAATAATGAGCAGAGTAATCTTAAAGTGCAGCAAGGAAATGGATCTTGTATGGTTAGAATTCCTCAGAGTGTTTCCCCAAATAAAGGAAAGCTCACAGAAGAAAGGGGTTCTAATTCAAATTTGACTGTTGGTTTGAGGTCCACTAGGAATCGGAGGTCTACTTATAATATCCATGAGACGAGTCCTGTAAATAGAAGGAAATCACTTCAATCAACTGTGAAGGGATCCTGGTTGCTGTTATCCACACATGAGGAAGGATGTAGATATATTCCTCAACAGGGAGATGAAGTGGTGTATTTAAGACAGGGACACCAGGAATATATAGATTATAGCCGTAAAAGAGAATCGGGGCCTTGGGTGTCACTTAAGGGACATCTAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTTGAGTATTCTCATGTTCCAGGGTCGGGTGATAGCTGCTGCAAAATGACCCTCCAGTTTGTAGATTCAAATTCAAGTGTTGTTGGCAAAACCTTTAAATTAACCCTACCTGAAGTGACCAGTTTCCCTGATTTTCTTGTTGAAAGAACTAGGTTTGATGCTGCTATCCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAAGAATGAGGATAATTCCTCTGGTAATTGGTGGGAGGGTCGAATTCAGTTTGTGAAAGCCAAATCTTCTGAATTTCCAGACAGTCCATGGGAGAGATATAGTGTTCGGTACAAGAGTGACCTCTCTGATGAACATTTGCATAGTCCTTGGGAGCTTTTTGACGCTGATACTCAATGGGAACAACCACACATTGATGATCACACGAGAAATAAACTGCTGTCTGCTCTCGCCAAATTACAGCAGTCAGGCAACACCCTTCAGGATCGTTATGGACTGCATGAACTGATGAAAATTTCAAATAAGTCAAAATTTACGAACAGATTTCCAGTTCCTCTGTCCATTGAATTGATGGAATCAAGGTTGGAGAATAATTACTACCGAAGTTTGGAGGCACTGAAGCATGATGCCTCAATTCTACTGTCCAATGCCACCTCGTTTTTTGAAAAGGATGCAGAGATGACTACCAAAATTAAACGCTTATCAGACTGGTTCGCTCGGACATTATCATCTTTATAG 5151 0.4162 MALQKYVPSGDAPAVNLKHLSFSSKVPEKTQSDVANQNHEMDVDVDLREVYFLIMHFLSGGPCQKTYLQFRNELLENQLLPRRYHAWYSRSGACSGIIQDDSQSFPLGYDKLVERYPHIEKDHLVKLLKQLLLNKASLSPGLSTGNAPNAADVPTLLGTGSFSLLSYDREKVNKEVKPPPPYMRWPHMKANQVHGLSLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAILDRSGRYVITGSDDRLVKIWSMETAYSLASCRGHDGDITDLAVSSNNAAVASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARNTQSSPRLYVPRPSDSGRSSGPSSNTMPQNHQIFCCAYNANGTVFVTGSSDNLARVWNACKLNTEDPDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSTTETWKEDNIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGVPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPVIQDTHGNVLDQETQMIPYRRNMQDLLCDSAMIPYPEPYQSEFQRRRLGSFGQEWRPSSLKFAIGPDFNLDPEYHMVPLADLDMVIEPPPEFIDVMDWEPEIDVFANDTDSEYNLTDDSSSRGEKGGSSSNASGDPGSSTDNSDNEDIHMDSIRRSKRKKQKTGIDITTSSGRRVKRRNLDECEENVHSTSRSRKGKGGRKTSRRKSSKSKSSRPQRAAARNALNLFSKITGGPIEGEEDSLVGDSSDSDSTLQESNIDSEESGRASQNDRQNYSKGKEVLLYESEDTKSHELTESHVNRRRLVLKFPIRGSSKPAHDFENQAGLVGSSSKTAQESPGFNGNNIPSSTEQGYRFGNGSYSSIERTDQVYVDLLEKIRWGEVRARSSKPLRVREAVPPCANPNSLKCPNHLNENGNVSTGHEKEDKDFSSTSTPALEIQNDDKVDSLTEINENCADSTSQPFNPTGNGEPPLTASSNYTDQDETLVSAGMTPQDTILVSVGHSGVDQLPEPNIGFPPVSTKLRSKRGTRNPESPCKHDTKSSVLKNIASSCNADNNLNNEEHVVVVKDDNNTRLTSNQRENDSQEVDAQAKQVSTSHDSLEPHSNRDKMFKAVYRRSRSHKAVTNGSGMGESTSNGSNSKLNVAVDSNGTNEALHTNGSLELELGTRIPNNEQSNLKVQQGNGSCMVRIPQSVSPNKGKLTEERGSNSNLTVGLRSTRNRRSTYNIHETSPVNRRKSLQSTVKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYSRKRESGPWVSLKGHLRAVEYCRVQSLEYSHVPGSGDSCCKMTLQFVDSNSSVVGKTFKLTLPEVTSFPDFLVERTRFDAAIQRNWTRRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKSDLSDEHLHSPWELFDADTQWEQPHIDDHTRNKLLSALAKLQQSGNTLQDRYGLHELMKISNKSKFTNRFPVPLSIELMESRLENNYYRSLEALKHDASILLSNATSFFEKDAEMTTKIKRLSDWFARTLSSL 1716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01605 1716 CDD WD40 233 607 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1120 1147 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1235 1275 - -
Trre3g01605 1716 FunFam PH-interacting protein isoform X1 212 380 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1289 1314 - -
Trre3g01605 1716 Gene3D - 529 663 IPR015943 GO:0005515
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 608 IPR001680 GO:0005515
Trre3g01605 1716 Pfam Bromodomain 1648 1701 IPR001487 GO:0005515
Trre3g01605 1716 Gene3D - 1615 1716 IPR036427 GO:0005515
Trre3g01605 1716 MobiDBLite consensus disorder prediction 999 1022 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1357 1380 - -
Trre3g01605 1716 Pfam WD domain, G-beta repeat 568 607 IPR001680 GO:0005515
Trre3g01605 1716 Pfam WD domain, G-beta repeat 276 310 IPR001680 GO:0005515
Trre3g01605 1716 Pfam WD domain, G-beta repeat 232 269 IPR001680 GO:0005515
Trre3g01605 1716 Pfam WD domain, G-beta repeat 389 416 IPR001680 GO:0005515
Trre3g01605 1716 Pfam WD domain, G-beta repeat 317 356 IPR001680 GO:0005515
Trre3g01605 1716 FunFam PH-interacting protein isoform X1 467 665 - -
Trre3g01605 1716 SUPERFAMILY Bromodomain 1643 1714 IPR036427 GO:0005515
Trre3g01605 1716 Gene3D - 212 385 IPR015943 GO:0005515
Trre3g01605 1716 Gene3D - 386 519 IPR015943 GO:0005515
Trre3g01605 1716 ProSitePatterns Trp-Asp (WD) repeats signature. 594 608 IPR019775 -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1239 1269 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1290 1314 - -
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Trre3g01605 1716 FunFam WD40 domain-containing protein 381 460 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1173 1211 - -
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 272 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 363 384 - -
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 359 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1195 1209 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 1076 1147 - -
Trre3g01605 1716 PANTHER WD REPEAT DOMAIN 9 37 1712 - -
Trre3g01605 1716 FunFam WD40/YVTN repeat-like-containing domain 1610 1716 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 842 863 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 780 812 - -
Trre3g01605 1716 ProSiteProfiles Bromodomain profile. 1656 1699 IPR001487 GO:0005515
Trre3g01605 1716 ProSitePatterns Trp-Asp (WD) repeats signature. 343 357 IPR019775 -
Trre3g01605 1716 SUPERFAMILY WD40 repeat-like 229 651 IPR036322 GO:0005515
Trre3g01605 1716 MobiDBLite consensus disorder prediction 778 947 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 864 883 - -
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 320 IPR001680 GO:0005515
Trre3g01605 1716 CDD Bromo_WDR9_I_like 1588 1716 - -
Trre3g01605 1716 MobiDBLite consensus disorder prediction 917 946 - -
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 312 - -
Trre3g01605 1716 SMART WD40_4 230 269 IPR001680 GO:0005515
Trre3g01605 1716 SMART WD40_4 314 356 IPR001680 GO:0005515
Trre3g01605 1716 SMART WD40_4 526 564 IPR001680 GO:0005515
Trre3g01605 1716 SMART WD40_4 567 607 IPR001680 GO:0005515
Trre3g01605 1716 SMART WD40_4 378 416 IPR001680 GO:0005515
Trre3g01605 1716 SMART WD40_4 272 311 IPR001680 GO:0005515
Trre3g01605 1716 SMART WD40_4 428 493 IPR001680 GO:0005515
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 365 IPR001680 GO:0005515
Trre3g01605 1716 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 416 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01605 Trre-Chr3 12746746 12759793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01605 229 416 Miscellaneous Gene Families AT5G08390 22.751 3.03e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01605 K11797 - gmx:100818665 2649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01605 3 12746746 12759793 Trre3g01605 3 12746746 12759793 ECH