Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01533 ATGTTATCATCAAATTCTCTTAGATTCAACTTCAATTACTTCCCAAATTCCTATCTTTCTTCTACATCATCATCATCATTTTCAGGTCAATTTTCTCTTCAAATTAACCCCACAAAATCATTACCACTTATTCTCAATGCTGGCAAGAAAGATAATCATAGTTTTGTACCCAAATCAGATGAAGTAACTGGGTTCTTCCCTGAATCTGTTCTTCTTAAAAAGAAGGAAGTTGAGGAAGATGGTAAGCTTCTTCCGGAGTTTGAAGATGCTGATGAAAGAGAACTCTATGAATCGCTGAAGCTTGACGTGGAAACTGATATGGATGTCGAACTATTGCGCCACTATGAGATTGTTTACTTAATTCATGAGGACCATGAAGAAGAGGTTGCAGCTGTCAATGAAAAAGTTCAAGAATTTTTGAGGGAGAAGAAAGGAAGAGTGTGGAGATTCAGTGATTGGGGTATGAGAAGCCTGGCTTACAAAATACAGAAAGCTAATAATGCGCACTATATTTTGATGAACTTCGAGTTGGACGCCAAATATATCGACGAGTTCAAGACTATGTTGGACAAAGATGAAAGAGTCATTCGGCATCTGGTGATGAAGAAGGACGAGGCAATCACTGAAGATTGCCCTCCCCCTCCTGAATTTAATACTCTTGCTGCAAACATAGATGATGAAGACGACGAAGAATGGGATGATGAAGACGATGAGGATGACTATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGAGGACGATGACGACGACGATGATGATGTTGATGATGACGACGATGTTGATGATATTGAGGATGGTGAGGGGATTTTCATTGTAGATGACGATGATTTGGAAACATCAGAGAACCAGAAAATAACATCATGA 906 0.3985 MLSSNSLRFNFNYFPNSYLSSTSSSSFSGQFSLQINPTKSLPLILNAGKKDNHSFVPKSDEVTGFFPESVLLKKKEVEEDGKLLPEFEDADERELYESLKLDVETDMDVELLRHYEIVYLIHEDHEEEVAAVNEKVQEFLREKKGRVWRFSDWGMRSLAYKIQKANNAHYILMNFELDAKYIDEFKTMLDKDERVIRHLVMKKDEAITEDCPPPPEFNTLAANIDDEDDEEWDDEDDEDDYDDDDDEEEEEEEEEEDEEDDDDDDDDVDDDDDVDDIEDGEGIFIVDDDDLETSENQKITS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01533 301 MobiDBLite consensus disorder prediction 206 301 - -
Trre3g01533 301 CDD bS6 114 203 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre3g01533 301 Gene3D - 108 210 IPR014717 -
Trre3g01533 301 MobiDBLite consensus disorder prediction 222 290 - -
Trre3g01533 301 Coils Coil 122 142 - -
Trre3g01533 301 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 110 222 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre3g01533 301 Pfam Ribosomal protein S6 114 202 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre3g01533 301 SUPERFAMILY Ribosomal protein S6 112 212 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre3g01533 301 Hamap 30S ribosomal protein S6 [rpsF]. 112 205 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre3g01533 301 FunFam 30S ribosomal protein S6 112 206 - -
Trre3g01533 301 NCBIfam 30S ribosomal protein S6 113 204 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre3g01533 301 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01533 Trre-Chr3 12114392 12117460 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01533 - - mtr:11416822 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01533 3 12114392 12117460 Trre3g01533 3 12114392 12117460 ECH