Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01530 ATGGAAAAATTAGGAGATGGGATTTTTCCAGATGAGGTTGTTATGCAGATTCTTGCAAGATTACCAGTGAAATCGCTTTTTAGGAGCAAAACTGTGTGCAAATTATGGTATAAGTTGACTTTGGATAAGTATTTTATTCAATTATACAATGATGTTTCTAGGAAGAACCCTATGATACTTGTTGAGATTTCAGATTCATTGTTAGAGTGCAAATCTAGCTTAATTTGTGTTGATAATTTAAGGGGTGTCTTTGAATTTTCGCTGAATTTCTTGAATGATAGAGTTAAGGTTCGCGCGTCGTGTAATGGATTATTGTGTTGTTCTAGTATTCCTGATATGGGTGTGTACTATGTTTGTAATCCGGTTACTCGCGAGTTTAGGTTGCTTCCTAAGAGCAGGGAAAGACCGGTGACTCGGTTTTATCCTGATGGTGAAGCTACCTTGGTCGGGTTGGCTTGTGATCCGGCATTTCAGAAGTTTAATGTTGTTCTTGCTGGTAGTCATCGTACTTTTGGGCATAGGCCGGATGGGAAATTTATATGTTTGGTGTTTGATTCGGAGTTGAATAAGTGGAGGAAGTTGATTTCTTTTCAAGATGAACATTTTACTCATATGAATAAGAATCAAGTTGTTTTCGTCAATAATGCTTTGCATTGGTTGACTGTTAGCTCGAGTTATATACTCGTGCTTGATTTAAGTTGCGATATTTGGAAGAAGATGTCGTTACCGTACGACCCGATTTATGGAGTGGGAAATAGGACTTATCTATTGGAGTTGGATGGTTGTCTTTCTGTTATACAAATTTCCGAAGCGTGGATGATTATATGGGTACTAAAAGATTACTGGAAAGATGAATGGTGCGTCGTGGATAAGGTGAGCTTAAGGTGTATCAGAGGAATGGTGCCGGGGATTTTCCCGATCAGTCAGACAAGTGAATATGTTTTCTTGGCAACTCATAAGCAGGTTTTGGTGTATCATCGCAGGAGCCAAGTTTGGAAAGAAATGTACTCTGTGAAGTATAGCTCAACACTTCCGTTATGGTTTTCAGCACATGCGTATCGCAGCACAATGTTCTCGTGTAACTGA 1086 0.3904 MEKLGDGIFPDEVVMQILARLPVKSLFRSKTVCKLWYKLTLDKYFIQLYNDVSRKNPMILVEISDSLLECKSSLICVDNLRGVFEFSLNFLNDRVKVRASCNGLLCCSSIPDMGVYYVCNPVTREFRLLPKSRERPVTRFYPDGEATLVGLACDPAFQKFNVVLAGSHRTFGHRPDGKFICLVFDSELNKWRKLISFQDEHFTHMNKNQVVFVNNALHWLTVSSSYILVLDLSCDIWKKMSLPYDPIYGVGNRTYLLELDGCLSVIQISEAWMIIWVLKDYWKDEWCVVDKVSLRCIRGMVPGIFPISQTSEYVFLATHKQVLVYHRRSQVWKEMYSVKYSSTLPLWFSAHAYRSTMFSCN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01530 361 NCBIfam F-box protein interaction domain 100 325 IPR017451 -
Trre3g01530 361 ProSiteProfiles F-box domain profile. 3 52 IPR001810 GO:0005515
Trre3g01530 361 CDD F-box_AtFBW1-like 9 45 - -
Trre3g01530 361 Pfam F-box-like 10 43 IPR001810 GO:0005515
Trre3g01530 361 PANTHER BNACNNG10540D PROTEIN 9 339 - -
Trre3g01530 361 SMART fbox_2 9 49 IPR001810 GO:0005515
Trre3g01530 361 SUPERFAMILY F-box domain 9 58 IPR036047 GO:0005515
Trre3g01530 361 Gene3D - 9 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01530 Trre-Chr3 12088549 12089634 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01530 - - gmx:100811223 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01530 3 12088549 12089634 Trre3g01530 3 12088549 12089634 ECH