Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01517 ATGTTCTTCAGTGGCGATCCCTCTAATCGTAAACGCGTCGATTTAGGTGGTCGTAGTACGAAGGAAAGAGATAGAAAGAATCTTCTAGAACAGACTCGATTGGAAAGGAATCGACGGTTGTGGTTGCGTCAGCAGAACTCTGCTGCACTTCGGATTCAGAAATGCTTCAGAGCAAAAAAAGTTGTCAGAGCAGAACACTCTAAGCTGCGACAGAAATTCCTTCAAATCTATGGGACGAACTGCCTTAATGTTGACAGGAAAGCTTTTGGTCCAGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGTGGAAAACCATGATGATTTTTTAGTTCTTGTGCAAATTTGCCGATTGATTCTTCAATTTGGTCAAGAAAGTGGGGATGCTGTGAGACTTTTTGCTGGTGAAGATTACTCATCCATATGTGCTTTTGTGAACTGCCGAGTGAAGAAGCTTGCATATAATTGTATTCGTGCAGTACATCATAACAGAAATCAGTTAAAGGATCAACTTTTTTTGACTCCGAAGGATTGTAATGCATCAGCTATTCCTTTATTGGAAGTTTTATTACTGTTGATAGACCTCAAGCTGCCATGGAGCTGTAAGATAGTAGGATATCTCTCTCAAAACAATGGATTCGGCCTACTTAGAGAGATTATTCTGACAGGAAAGGATCATGCAGAAAAATGTATTGGATCGTCTTTGGAGTGTGTGCTTACAGGTGTAATGTGTCACATTGGTCAGAATCCATGTATCTGTTCAGACATTGATCCAAGATATAGCTTCTCATTGCAGATCCTTACAATTCCTTTCTTATGGCATGTTTTTCCAAACTTAAGACAGGTTTTTGCAAAAAAGGGCATGGGCCAGCATTACATTCATCAAATGGCGACGTTTGTGCCAAATCTGATCAATTTTCTACCTAAGGATATATCAGATGAATTTCCTACGTATGCCTGTCTTCTTGGCAATATATTAGAAACTGGTGGAGTTGCTTTGTCTCGACCTGACTGTTCATTTGATATGGCCATAGACCTTGCAGCTGTTACTACATTTTTACTGGAGGCGCACCCCTCTCTGACAAGATCTGATAGTAGAGGAAATTCTATGATCGCTGAGGATGATATGACTGGCGATGAAGTCATGGAAGTAGCTCTGGATAGAAAATTAGATCAACAAATTTGTAATTCCATAGATACTCGCTTCCTTCTGCAACTGACAAATATATTATTTAGAGATATTTCATCTGCAAATGGGCCAGATGATATGGAGGTTGCAGCTGTTGGTGCAGTTTGCGGGTTTTTATATGTTATCTTCAACACATTGCCACTTGAAAGGATTATGACTGTGCTCGCCTACAGAACTGACCTTGTTCCTATGCTTTGGAATTTTATGAAGCGGTGCCATGAGAACAAAAAATGGTCATCGTTGTCTGAGCGGTTATCATACCTCTCAGGGGATGCCCCTGGTTGGCTGTTACCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTTATGATAGTTGATAATGAGGAATTTTATGAGCAGGAGAAACCCCTATCACTGAAGGATATCAGCAGCCTCATCATTCTATTGAAGCAGGCTCTGTGGCAGCTACTGTGGGTAAATCATACCTCATCTGCTAATTCAGTTAGGTCTAATGCAGTTAGGACAAGCAGTAAAAAGCTTTCTATTGAAGCCATTCAACAGAGGGTTAGCATAGTCGTCTCCGAGCTCCTGTCCCAGCTCCAAGATTGGAACAACAGACGACAGTTTACATCCCCCAGTGATTTCCATGCTGATGGGGTGAATGACTTTTTTATCTCTCAGGCTGTTATAGAAAATGCACGAGCAAATGAAATTTTAAAGCAGGCTGCTTTCTTGATACCATTTACAAGCAGAGTTAAAATTTTCACCTCTCAACTAGCTGCAGCTAGGCAAAGACAAGGATCTCAAGCTGTATTTACTAGAAACCGGTTCAGAATAAGACGTGATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGAAGATCTTCGAGGACTGATTCGCGTGACTTTTGTCAATGAATTTGGAGTTGAAGAAGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGGGCTTCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCATCTGCTTTATCCAAATCCTGGATCTGGAATGATACACGAACAACATCTCCAATTTTTCCACTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTCGAAGGGATTCTTGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAGAAGCACAACTATTTGAATGACCTGCCTTCCCTGGACCCTGAATTATATCGCCATCTTATATTTCTAAAGCGTTATGAGGGTGACATTTCGGAGTTAGAACTATACTTTGTTATATTAAATAATGAATATGGAGAGCAAACAGAAGAGGATCTGCTACCAGGGGGAAAGAACCTGCGTGTCACAAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCATCGCTTGAATTCTCAGATACGTCAACAAAGTTCTCATTTCTTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGATCACTTGATAGCTTGGATGTTGATGATTTGCGGCAGCATACGAATTATGCAGGAAGTTACCATAGTGAATTGGGGTATCTTATCAGAAATTATTGGGAATAG 2805 0.4004 MFFSGDPSNRKRVDLGGRSTKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRAKKVVRAEHSKLRQKFLQIYGTNCLNVDRKAFGPDSDFLRQFLYFFNVENHDDFLVLVQICRLILQFGQESGDAVRLFAGEDYSSICAFVNCRVKKLAYNCIRAVHHNRNQLKDQLFLTPKDCNASAIPLLEVLLLLIDLKLPWSCKIVGYLSQNNGFGLLREIILTGKDHAEKCIGSSLECVLTGVMCHIGQNPCICSDIDPRYSFSLQILTIPFLWHVFPNLRQVFAKKGMGQHYIHQMATFVPNLINFLPKDISDEFPTYACLLGNILETGGVALSRPDCSFDMAIDLAAVTTFLLEAHPSLTRSDSRGNSMIAEDDMTGDEVMEVALDRKLDQQICNSIDTRFLLQLTNILFRDISSANGPDDMEVAAVGAVCGFLYVIFNTLPLERIMTVLAYRTDLVPMLWNFMKRCHENKKWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDISSLIILLKQALWQLLWVNHTSSANSVRSNAVRTSSKKLSIEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVIENARANEILKQAAFLIPFTSRVKIFTSQLAAARQRQGSQAVFTRNRFRIRRDHILEDAYNQMSQLSEEDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRASFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKRYEGDISELELYFVILNNEYGEQTEEDLLPGGKNLRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGSYHSELGYLIRNYWE 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01517 934 SMART hect_3 680 931 IPR000569 GO:0004842
Trre3g01517 934 FunFam Putative Ubiquitin-protein ligase E3C 787 866 - -
Trre3g01517 934 Pfam HECT-domain (ubiquitin-transferase) 718 924 IPR000569 GO:0004842
Trre3g01517 934 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 10 924 IPR044611 GO:0000209|GO:0061630
Trre3g01517 934 CDD HECTc 661 934 IPR000569 GO:0004842
Trre3g01517 934 ProSiteProfiles HECT domain profile. 682 934 IPR000569 GO:0004842
Trre3g01517 934 Gene3D Hect, E3 ligase catalytic domains 663 901 - -
Trre3g01517 934 Gene3D Hect, E3 ligase catalytic domain 787 866 - -
Trre3g01517 934 SUPERFAMILY Hect, E3 ligase catalytic domain 653 933 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01517 Trre-Chr3 11859978 11878812 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01517 K10589 - gmx:100787467 1577.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01517 3 11859978 11878812 Trre3g01517 3 11859978 11878812 ECH