Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01515 ATGGTGAAGGTTCGTATGAACACGGCCGATGTCGCCGCCGAAGTCAAATGTCTCCGACGGTTAATCGGAATGCGATGTTCCAATGTCTATGATCTCACCCCCAAGACGTACGTTTTCAAGCTTATGAACAGCAGTGGAGTCTCTGAATCCGGTGAAAGCGAGAAGGTTTTGCTACTCATGGAAAGTGGTGTTAGATTGCACACTACTGTTTATATGCGTGACAAAAGCAACACTCCTTCTGGTTTTACACTCAAATTGAGGAAACATATTCGAACTAGAAGGCTTGAGGATGTGCGACAACTTGGGTATGATCGGATTGTTCTTTTTCAATTTGGACTCGGGGAGAATGCGAACTATGTTATATTAGAGTTATATGCTCAAGGAAACGTCATCCTCACGGATTCTAGCTTCACTGTCTTGACTCTACTTCGATCTCACAGGGATGATGATAAAGGGTTTGCAATCATGTCACGCCATCGTTATCCCGTAGAAAGTTGTCGAGTTTTTGAACGAACAACTACATCAAAGCTGCAGACAGCCCTAACATCTTCCAAGGAAGATGACAATGATGAGGCTGTTAAGGCCAATGGAAATGGAACTGATGTTTCTAATGTAGAAAGAGAGAAGCAGGGATCCCGGAAAGGTGGGAAGTCATTTGCCACTTTGAAAATTATCCTTGGGGAAGCACTCGGTTATGGACCTGCCCTTTCTGAACACATGATATTAGATGCTGGTTTAATCCCCAATGAGAAAGTACCCAAAGATAAAACGTGGGATGATGCCGCTGTTCAGGCATTGGTCCAAGCTGTTGCAAAGTTTGAAGATTGGATGCAGGATATCATTTCAGGTGAAATAGTTCCAGAAGGATACATTTTGATGCAAAACAAAAATTTGGGGAAGGATTCTTCTGTATCTCAACCTGAAAGTCTTAAACAGATCTATGATGAGTTCTGCCCCATCTTACTTAACCAGTTTAAGTCAAGGGAACATACAAAGTTTGAGACATTTGATTTAGCCTTGGATGAATTCTACAGCAAAATTGAGAGTCAAAGGTCTGAACAACAGCACAAAGCCAAAGAGAACTCAGCTCTTCAGAAACTTAATAAGATACGCAATGATCAGGAAAATCGAGTGCACACTTTGAGGAAAGAAGCAGATCACTGTATTCAAATGGCAGAATTGATAGAATATAATTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTATCTCTTGCTAAGGGTATGAGTTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCCGGAAACCCAATAGCTGGTCTTATTGACAAGCTCCATCTTGAAAGAAATTGCATGACTTTACTGTTGAGCAACAATCTTGACGAAATGGATGATGATGAGAAGACACTACCTGCGGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACTGAAGAAAAAACAAGAGAGCAAACAGGAAAAGACTATAACTGCCCATGAAAAAGCTTTTAAAGCTGCAGAGAAAAAGACTCGCCTACAGCTTAATCAGGAAAAAACTGTTGCCTCAATTTCGCATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGATTATCAGTGGACGCGATGCCCAGCAAAATGAGATGATAGTAAAGCGTTATATGTCAAAAGGAGATCTGTATGTGCATGCTGAACTGCATGGAGCTTCTAGTACAGTTATCAAGAATCACAAACCTATGCAGCCGGTTCCGCCACTGACCCTAAACCAAGCAGGATGTTTCACAGTTTGCCATAGCCAGGCATGGGATTCAAAAATGGTTACCAGTGCCTGGTGGGTGTATCCTCATCAGGTTAGTAAAACTGCTCCTACTGGGGAATATCTGACAGTAGGGAGTTTCATGATACGGGGAAAGAAAAATTATCTTCCACCACACCCTCTTATCATGGGTTTTGGCCTGCTATTTCGCTTAGATGAGAGTTCACTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAGGAAACAATAGATGATAATGTAGAAACTGACCCTGTTGAAGAACAATCTGATTCAGAGTCTGAGAAGGATGCTGCTGATGGAGAATCTGCTGCAGACTCAGAAAGGAATGGTAAGCCATCTGCAGATTCACTCATACCTCTATCAGAAAACATTCTTGCCGACACATCTCAAACTAGTTTGGATACAATGAATGCCAAAACTACAGTTTCAGATGATATTTTTGCAAAAGATACAAGTACGAAAAATATGCTTGATAGTGAGAAATTACCTGACATCGGTGGAAATGGCTCAACATCTGTCTCCCCTCAGCTTGAGGAACTTCTTGATCGAGCTCTGGGACTTGGATCTGTTGCCAAATCAAATAAAAGTTATGGAGCTGAGAACACTCAGGTTGATTTGAGCAGTGAGAACCATGATATCGAACCGAGCAAACCTGCTGTAAGGGATAAACCATATATATCAAAAGCTGAGAGAAGAAAGCTTAAAAATGAACCTAAACATGGAGAAGCATATCCAAGCGATGAACATGGAAAGGACAACTCAAAAACAAAAGATAGTTCTGGTAATCTGCATGCAAAATATCCAAGCGATGAACATGGAAAGGACAAATCAAAAACAAAAGATAGTTCTGGTAATCTGCATGTAAAAGATGCTCAAAATTTGAAGACAGGTGGTGGTAAAAAAGTCAGCCGTGGACAAAAGGGAAAGCTTAAGAAAATAAAGGAGAAGTATGCTGATCAAGATGAGGAAGAAAGGAGCATCCGAATGACATTATTGGCCTCTTCTGGAAAACCAATCAAGAAGGAAGAGACATTACCTGTAAATGAAGTCTCGGTCAAAGGGAAAAAATCTGACAGTGGTCCTATTGATGCTCCAAAAATATGTTACAAGTGTAAGAAGGTGGGTCATTTATCTCGGGATTGTAAGGAGCAATCAAATGATCAGTTGCACAGTCATGCAATCAGTGAAGCTGAAGAAAATCCCAACACAAGTGCTTTAAACACTTCCGTAGAGGATAGAGTAGCAATGGAAGAAGATGATATTAATGAAATAGGAGAAGAAGAGAAAGAAAAACTGAATGACGTGGATTACTTGACAGGGAATCCACTCCCAAATGACATTCTCTTATATGCTGTTCCTGTATGTGGTCCATACAACGCAGTTCAGTCTTACAAGTATCGAGTGAAGATAATTCCTGGACCCGTGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAACCTATTCAGCCACATGTCAGACGCAACAAATCGGGAGAAGGAGTTGATGAAAGCCTGCACAGATCCTGAATTAGTTGCTTCAATTATTGGTAATGTGAAGATAACTGCAGCTGGCCTTACTCAATTAAAGCAGAAACAAAAGAAAGGCAAGAAGAGCAGCGCCAAACAAGCGAGTTAG 3489 0.4107 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIVLFQFGLGENANYVILELYAQGNVILTDSSFTVLTLLRSHRDDDKGFAIMSRHRYPVESCRVFERTTTSKLQTALTSSKEDDNDEAVKANGNGTDVSNVEREKQGSRKGGKSFATLKIILGEALGYGPALSEHMILDAGLIPNEKVPKDKTWDDAAVQALVQAVAKFEDWMQDIISGEIVPEGYILMQNKNLGKDSSVSQPESLKQIYDEFCPILLNQFKSREHTKFETFDLALDEFYSKIESQRSEQQHKAKENSALQKLNKIRNDQENRVHTLRKEADHCIQMAELIEYNLEDVDAAILAVRVSLAKGMSWDDLARMVKEEKKAGNPIAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPADKVEVDLALSAHANARRWYELKKKQESKQEKTITAHEKAFKAAEKKTRLQLNQEKTVASISHMRKVHWFEKFNWFISSENYLIISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPMQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNYLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEETIDDNVETDPVEEQSDSESEKDAADGESAADSERNGKPSADSLIPLSENILADTSQTSLDTMNAKTTVSDDIFAKDTSTKNMLDSEKLPDIGGNGSTSVSPQLEELLDRALGLGSVAKSNKSYGAENTQVDLSSENHDIEPSKPAVRDKPYISKAERRKLKNEPKHGEAYPSDEHGKDNSKTKDSSGNLHAKYPSDEHGKDKSKTKDSSGNLHVKDAQNLKTGGGKKVSRGQKGKLKKIKEKYADQDEEERSIRMTLLASSGKPIKKEETLPVNEVSVKGKKSDSGPIDAPKICYKCKKVGHLSRDCKEQSNDQLHSHAISEAEENPNTSALNTSVEDRVAMEEDDINEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGPVKKGKAAKTAMNLFSHMSDATNREKELMKACTDPELVASIIGNVKITAAGLTQLKQKQKKGKKSSAKQAS 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01515 1162 Gene3D - 981 1030 - -
Trre3g01515 1162 MobiDBLite consensus disorder prediction 693 712 - -
Trre3g01515 1162 MobiDBLite consensus disorder prediction 680 740 - -
Trre3g01515 1162 FunFam nuclear export mediator factor Nemf 6 163 - -
Trre3g01515 1162 SUPERFAMILY Retrovirus zinc finger-like domains 983 1004 IPR036875 GO:0003676|GO:0008270
Trre3g01515 1162 ProSiteProfiles Zinc finger CCHC-type profile. 986 1001 IPR001878 GO:0003676|GO:0008270
Trre3g01515 1162 SMART c2hcfinal6 985 1001 IPR001878 GO:0003676|GO:0008270
Trre3g01515 1162 MobiDBLite consensus disorder prediction 828 903 - -
Trre3g01515 1162 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Trre3g01515 1162 Coils Coil 357 384 - -
Trre3g01515 1162 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Trre3g01515 1162 MobiDBLite consensus disorder prediction 812 827 - -
Trre3g01515 1162 MobiDBLite consensus disorder prediction 179 214 - -
Trre3g01515 1162 Pfam NFACT N-terminal and middle domains 10 161 - -
Trre3g01515 1162 Pfam NFACT N-terminal and middle domains 225 528 - -
Trre3g01515 1162 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1137 - -
Trre3g01515 1162 MobiDBLite consensus disorder prediction 809 943 - -
Trre3g01515 1162 Pfam Zinc knuckle 985 1001 IPR001878 GO:0003676|GO:0008270
Trre3g01515 1162 Pfam NFACT protein C-terminal domain 1046 1138 IPR021846 -
Trre3g01515 1162 MobiDBLite consensus disorder prediction 1013 1028 - -
Trre3g01515 1162 MobiDBLite consensus disorder prediction 1001 1031 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01515 Trre-Chr3 11843936 11852696 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01515 K24971 - gmx:100807437 1787.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01515 3 11843936 11852696 Trre3g01515 3 11843936 11852696 ECH