Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01172 ATGGGGATTGTTTCTCAGGATGCCCTTAACCAACTGCAGGTTCTCATAGATCAAGTTGATGAGCCACTTCAGAAAACGTTTCAGAATGTTCATCAAGGACATGTAACCGAAACCTTGATTCGGTTTCTGAAAGCAAGGGAATGGAATGCTTCAAAGGCGCATAAAATGTTAATTGATAGTTTGAACTGGAGGGTGCAAAATGAAATTGACAAAATATTATCGAAACCAATAATCCCTCAAGATTTGTACAGAGGTGTGCGTGATTCTCAGCTCATAGGATTGTCAGGGTACTCAAGAGAGGGTCTGCCTGTCTTTGCAATCGGTGTTGGACTTAGCACATTTGACAAAGCATCTGTCCATTATTATGTTCAGTCTCACATTCAAATTAATGAATATCGTGATCGTGTAATCTTGCCTTCTGCATCAAAGAAGCATGGTCGCCCTATCACAACATGCGTAAAGGTTTTGGATATGACTGGTCTGAAGCTGTCAGCCCTGAATCAGATTAAGTTGTTAACAATAATATCCTCCATTGATGATCTGAACTACCCTGAGAAGACAAATACTTATTACATTGTAAATGCCCCGTACATATTTGCGGGTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACTAGAAAAAAGGTGCAAGTCTTACAAGGTTGTGGGCGAGATGAGTTGTTGAAGATCATGGATTACGCATCTCTACCGCATTTCTGTAGAAAAGAAGGTTCTGGATCATCCAAACATTCAGGAAGCGGGAGTGAAAATTGCTATTCCTTGGATCACCCTTTTCATCAAGAACTCTACAACTACATAAAGGAACAATCCAGAATGAATGAATCAAAGGAACCAATTAAGCAAGGATCTTTCCATGTAGACTTTCCTGAACCTGCTACTAAGGAAGAAGTGGATATCGCCAAGACTATAGAGTCCGAGTTAAACAAGTTTGAGAACAGCCGTGAGAATGTCGATTGTTGA 987 0.4043 MGIVSQDALNQLQVLIDQVDEPLQKTFQNVHQGHVTETLIRFLKAREWNASKAHKMLIDSLNWRVQNEIDKILSKPIIPQDLYRGVRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGRPITTCVKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFAGCWKVVKPLLQERTRKKVQVLQGCGRDELLKIMDYASLPHFCRKEGSGSSKHSGSGSENCYSLDHPFHQELYNYIKEQSRMNESKEPIKQGSFHVDFPEPATKEEVDIAKTIESELNKFENSRENVDC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01172 328 Pfam CRAL/TRIO, N-terminal domain 16 59 IPR011074 -
Trre3g01172 328 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Trre3g01172 328 CDD SEC14 83 241 IPR001251 -
Trre3g01172 328 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 324 - -
Trre3g01172 328 Gene3D - 4 291 IPR036865 -
Trre3g01172 328 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Trre3g01172 328 SMART sec14_4 86 247 IPR001251 -
Trre3g01172 328 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Trre3g01172 328 SUPERFAMILY CRAL/TRIO domain 81 278 IPR036865 -
Trre3g01172 328 MobiDBLite consensus disorder prediction 283 302 - -
Trre3g01172 328 SUPERFAMILY CRAL/TRIO N-terminal domain 13 76 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01172 Trre-Chr3 8761959 8765569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01172 1 321 Acyl Lipid Metabolism Gene Families AT5G47730 75.078 1.97e-180 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01172 K26544 - gmx:100793867 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01172 3 8761959 8765569 Trre3g01172 3 8761959 8765569 ECH