Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01152 ATGCTTAGATCGCTTCCAAAGCTCTCAATTATTTTCTCTTCAACCAACAATTCTCGTTTTCTTGCAAATGCTACTCAACGTTTTATATCTTCATTTTCAACAACACCTGCTTCAAGAGTCAAATTTGGAGTGACAGCCCGGGTTCCAATTCGATGCATGTCAACCTCACCAATTTCATCACAGACTACATCAGAAGATCAAGTTCAACGGGTTAAACTACTAACATCAACTGATGATAATTATGGCGGCGTTATTGTGGAATTGGATCAGCTTATGGATTCTACAACATTCGTCTCAATTCTTAGAGCTTCAATTTTACACTGGAAACAGCTGGGCAAGAAGGGAGTTTGGATAAAATTACCTATCCATCTAGTCAGTCTTGCTGAAGCTTTAGTTAAGGAAGGTTTTTGGTATCATCATGCAGAACCAAAATATTTAATGCTTGTTTATTGGATTCCTGAAAGTCCAAATACTATTCCTGCAAATGCAACACACAGGGTCGGCATTGGTTCATTTATCATGAATGAAAAACACGAGGTGCTAGTTGTTCGAGAAAATAGTGGACTATTTCAGGGAACTGGGGTCTGGAAATTTCCTACTGGAGTTGTTGATCAGGGAGAAGATATTTGTGTCGCAGCAGTTAGAGAGGTCAAAGAAGAGACCGGAGTTGATTCAGAATTTCTGGAAGTATTAGCATTCAGACAAAGTCATAATTCATTCTTTGAGAAGTCAGATTTATTCTTTTTGTGTATGTTGCGGCCGCTTTCTTCTGAGATCCAAGTGCAGAGGTTAGAGATAGAGGGTGCACAGTGGATGCCATTTGCGGAATACACAGCTCAACCATTCATCCAAAAGAGTGATCTTTTGAAGTACATCAACGATATATGTTTAGCGAAGATTGATGGGAGATATTCTGGATATACTCCTGTATCTACATTATCAAACTTCTCTGAACAGCAGTTTTATTTGTACTTGAATGCTGGAGCATTGAAAAGGTCCAACTCTTGA 1008 0.3889 MLRSLPKLSIIFSSTNNSRFLANATQRFISSFSTTPASRVKFGVTARVPIRCMSTSPISSQTTSEDQVQRVKLLTSTDDNYGGVIVELDQLMDSTTFVSILRASILHWKQLGKKGVWIKLPIHLVSLAEALVKEGFWYHHAEPKYLMLVYWIPESPNTIPANATHRVGIGSFIMNEKHEVLVVRENSGLFQGTGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFLEVLAFRQSHNSFFEKSDLFFLCMLRPLSSEIQVQRLEIEGAQWMPFAEYTAQPFIQKSDLLKYINDICLAKIDGRYSGYTPVSTLSNFSEQQFYLYLNAGALKRSNS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01152 335 ProSiteProfiles Nudix hydrolase domain profile. 164 296 IPR000086 -
Trre3g01152 335 Gene3D - 71 157 - -
Trre3g01152 335 ProSitePatterns Nudix box signature. 201 222 IPR020084 GO:0016787
Trre3g01152 335 PANTHER NUDIX HYDROLASE RELATED 53 332 IPR003293 -
Trre3g01152 335 CDD Nudix_Hydrolase_12 165 296 - -
Trre3g01152 335 Pfam Nudix hydrolase domain 74 152 IPR040618 -
Trre3g01152 335 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 166 300 - -
Trre3g01152 335 SUPERFAMILY Nudix 132 287 IPR015797 -
Trre3g01152 335 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 146 162 IPR003293 -
Trre3g01152 335 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 124 142 IPR003293 -
Trre3g01152 335 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 250 274 IPR003293 -
Trre3g01152 335 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 162 180 IPR003293 -
Trre3g01152 335 Pfam NUDIX domain 165 279 IPR000086 -
Trre3g01152 335 FunFam nudix hydrolase 2 71 157 - -
Trre3g01152 335 FunFam Nudix hydrolase 8 166 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01152 Trre-Chr3 8352373 8355850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01152 K26956 - tpra:123898736 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01152 3 8352373 8355850 Trre3g01152 3 8352373 8355850 ECH