Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01010 ATGGCAAACAAGTTGAATATGGTGGTGTTATGTTTGTGTGTGTGGACCCTATTTTGTTTGGTTTCTTGTGAACCAAATGAAGGGTTGCGTAGGATTGGTTTGAAAAAGGTCCAATTGGGACCCAAAAACTTGTTGGGGTTGAAGGGTGGTGAATCTTCATATTCTTCCATTTTGGAGTCTCCTCTCAGAAACATCCTTGGAAGAAATGGGGAAACCGATATTGTTGCATTGAAGAATTACTTTGATGCTCAGTATTATGGTGAAATTGAGATTGGTACCCCTCCTCAGAAATTTACTGTAATCTTTGATACTGGTAGCTCTAATACTTGGGTTCCATCAGTTAAATGTTATTTATCGCTTGCATGCTACATGCACCCGAAGTACAAGTCAAGCGAATCAAGTACCTACAAGCCCAATGGGACTTCTGCTGCAATTCAGTATGGTACTGGATCAATTTCTGGTTTCTTTAGCTATGATAATATAAAAGTTGGTGATATAGTTGTGAAGGACCAGGAATTTATCGAAGCAACTAGTGAACCTGGAACTACATTTGTGATAGCTAAGTTTGATGGTTTACTTGGACTTGGATTTCAAGAGATATCAGTCGGAAATTCTGTCCCAATATGGTACAATATGATTGAACAAGGTCTTGTTAAGGATCCTGTATTTTCATTTTGGCTCAATCGTGATCCAAAAGCAGAGGAAGGTGGCGAGCTTGTTTTCGGTGGTGTCGATCCTGCTCACTTCAAGGGCGAACATACTTACGTGCCAGTGACAACAAAAGGATATTGGCAGTTTGCTATGGGAGATGTACTTATTGATGGAAAACCAACTGGATATTGTGATAATGGTTGTTCAGCAATTGCGGACTCAGGGACATCTTTGATAGCAGGTCCAACGGCTGTCGTTGCAATGATAAATCAGGCAATTGGAGCATCGGGAGTTTTCAGTAAAGAATGCAGGACTGTTGTTGATCAATATGGACAGACAATTTTACAATTGCTCTTGGCTGAAGCAAAGCCAAAGAAAATCTGCTCCCAAATTGGGTTGTGCACATTTGATGGGACTCATGGTGTTAGTATGGGTATCGAGAGTGTGGTGCAACCAACTGATAGAGTATCATCCGGCGGTCGTCAAGATGCTAGCTGTTCTGTATGTGAGATGGCTGTTGTTTGGATGCAGAACCAGCTGAAGCAGAATCAAACAGAAGAGCGGATAATAAACTACGCTAATTCGCTTTGTGATAAAATGCCTAACCCATTGGGACAAGCAGCAGTTGATTGTGGCAAGCTCTCTTCCATGCCTAAAGTTTCCTTCACCATTGGTGGCAAACAATTTGACCTTACCTCAGAACAGTATATATTAAAGTTGGAGCAAGGTGGTCAAGTTCAATGCATCAGTGGCTTTACTCCTATTGATATTGCTCCTCCAAGAGGCCCACTCTGGATCCTTGGAGATGTCTTCATGGGAGCATATCATACAGTCTTTGATTATGGTAAACTCAGAGTTGGATTTGCCGAAGCAGCATAG 1530 0.4163 MANKLNMVVLCLCVWTLFCLVSCEPNEGLRRIGLKKVQLGPKNLLGLKGGESSYSSILESPLRNILGRNGETDIVALKNYFDAQYYGEIEIGTPPQKFTVIFDTGSSNTWVPSVKCYLSLACYMHPKYKSSESSTYKPNGTSAAIQYGTGSISGFFSYDNIKVGDIVVKDQEFIEATSEPGTTFVIAKFDGLLGLGFQEISVGNSVPIWYNMIEQGLVKDPVFSFWLNRDPKAEEGGELVFGGVDPAHFKGEHTYVPVTTKGYWQFAMGDVLIDGKPTGYCDNGCSAIADSGTSLIAGPTAVVAMINQAIGASGVFSKECRTVVDQYGQTILQLLLAEAKPKKICSQIGLCTFDGTHGVSMGIESVVQPTDRVSSGGRQDASCSVCEMAVVWMQNQLKQNQTEERIINYANSLCDKMPNPLGQAAVDCGKLSSMPKVSFTIGGKQFDLTSEQYILKLEQGGQVQCISGFTPIDIAPPRGPLWILGDVFMGAYHTVFDYGKLRVGFAEAA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01010 509 Gene3D Acid Proteases 244 509 IPR021109 -
Trre3g01010 509 Pfam Saposin-like type B, region 1 383 418 IPR007856 GO:0006629
Trre3g01010 509 Pfam Eukaryotic aspartyl protease 84 508 IPR033121 -
Trre3g01010 509 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Trre3g01010 509 PRINTS Pepsin (A1) aspartic protease family signature 482 497 IPR001461 GO:0004190|GO:0006508
Trre3g01010 509 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Trre3g01010 509 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Trre3g01010 509 SMART sapb_4 279 351 IPR008139 -
Trre3g01010 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Trre3g01010 509 Pfam Saposin-like type B, region 2 318 351 IPR008138 -
Trre3g01010 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Trre3g01010 509 FunFam Lysosomal aspartic protease 372 508 - -
Trre3g01010 509 ProSiteProfiles Peptidase family A1 domain profile. 85 506 IPR033121 -
Trre3g01010 509 SUPERFAMILY Acid proteases 12 508 IPR021109 -
Trre3g01010 509 SUPERFAMILY Saposin 316 418 IPR011001 -
Trre3g01010 509 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Trre3g01010 509 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 64 507 IPR001461 GO:0004190|GO:0006508
Trre3g01010 509 FunFam Aspartic proteinase A1 315 418 - -
Trre3g01010 509 Gene3D - 315 418 - -
Trre3g01010 509 CDD phytepsin 75 507 IPR033869 GO:0004190
Trre3g01010 509 Gene3D Acid Proteases 30 243 IPR021109 -
Trre3g01010 509 FunFam Lysosomal aspartic protease 71 313 - -
Trre3g01010 509 ProSiteProfiles Saposin B type domain profile. 379 420 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01010 Trre-Chr3 7213023 7216346 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01010 K08245 - gmx:100801598 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01010 3 7213023 7216346 Trre3g01010 3 7213023 7216346 ECH