Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00673 ATGGAAAGCAAAAAATTTGATTCTAAGAATCAGGTGGAAGTTGTAGAAGATTTATCTACTAGGGTTTCTCGTTTCTCCCTTGAAAATCATATATCCAATTCCTATTCTCCTATGGATGATGAAGTGGATGGTAATATGAGGAGTTATCATGTTACTAGAGAGAATCATGATTCTTTGTCTTCTGTTAGCACTGAAGAACATAGTATGAATTTAACCAGTTTATATCCTGAATTACCTGAAGAATCGTTCGATAGGAATAAGGAGGATATGGAGTCTTTAGCTGATATTCAGAATCAGAGAAAGTATTTTTATTATGATGCTCCGTTGAATGAAGATACGGGAGTTTGGATACCAGTTTCGGTTCCACCTATGTTGGAAGATGATCATAAAGAATGGGCCAAAGGGTTTCACTCGAATGGTGGTTTTTTTCCCGACGATGATATGGGATGGAATCAGTATGTTGGTGGAGAGAAGGAATTGACTATGTGGGAAGTGTTGGTAGAAATTTTACTTGTAGCTAGGGGTAAAGTGTCTTCTTTGGCATTGGGAGATATTCATACGTGTAGCTTTTCATGGTTAACCAGCCATGTACTTGAACAAGCTTGGAGAGAGATGGCACAAACACTTACAGAAGCTAGCTTTGGTAATGTGAGGGAATTAATAGAAGCAGAACCTCCAAAATGGTTGGCGGATAGTGCTGCTGCTGCTTGTATGCTTTGTGGCGTGAGGTTTCATCCCATCATGTGTTCAAGGCATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAATGTTCCAAAGGACGGAGCTTGATGCCCTCAAAGTTCCGAGTTTCTGACCCTCAAAGAGTATGCGATGTATGTTGTGTCCGACTTGAGTCTATACAACCTTATTTAATGGACCATGTAAGTAATGCTGCTCAGTTGCCAACCCATGACTTGACGGATCTCAGCACTTTGAGATCATGGGTTAATTTTCCTTGGGGGCAGACCATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGTCTTATAACCAGGTAGGTTTATTAAAACCTGAGAAGACAATTCCAGATGCCATTCTTAGGCAAGCAAAAGGTCTCGCAATTATTACTGTGGTCAAAGTTGGTGTGGTGGTTACTTATAATATTGGAACAGGAATTGTGGTTGCGCGTAGGGAGGATGGTTCATGGTCTCCACCATCTGCTGTTTCGACATTTGGAGTGGGGTGGGGGGCTCAGGCTGGAGGGGAGTTAACAGACTTCATTATTGTTCTAAGAACAACTGAGGCTGTCAAGACATTTAGTGGTAATGCACATGTTTCACTTGGAGCTGGCTTGAGTGCTGCAGTTGGTGTTGTTGGAAGAGCCGTTGAAGCTGATGTTCGAGCTGGTGATGGTGGCTATGCTGCTTGTTATACGTACAGCTGCAGCAAAGGTGCATTTGTTGGTTGTTCCCTTGAAGGGAGTATTGTCACCACCCGTACACAAGAAAATAGTCGATTTTATGGCAGCCAGTCTTTAAGTGCAACAGACATACTTCTTGGCAACTTGCCTAGGCCACCTGCTGCAGCTATTCTTTACCGTGCTCTCGCAGATTTGTATTTGAAGATTGATGGTTATCATTGA 1632 0.421 MESKKFDSKNQVEVVEDLSTRVSRFSLENHISNSYSPMDDEVDGNMRSYHVTRENHDSLSSVSTEEHSMNLTSLYPELPEESFDRNKEDMESLADIQNQRKYFYYDAPLNEDTGVWIPVSVPPMLEDDHKEWAKGFHSNGGFFPDDDMGWNQYVGGEKELTMWEVLVEILLVARGKVSSLALGDIHTCSFSWLTSHVLEQAWREMAQTLTEASFGNVRELIEAEPPKWLADSAAAACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLMPSKFRVSDPQRVCDVCCVRLESIQPYLMDHVSNAAQLPTHDLTDLSTLRSWVNFPWGQTMEYEIYKATNTIKSYNQVGLLKPEKTIPDAILRQAKGLAIITVVKVGVVVTYNIGTGIVVARREDGSWSPPSAVSTFGVGWGAQAGGELTDFIIVLRTTEAVKTFSGNAHVSLGAGLSAAVGVVGRAVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRTQENSRFYGSQSLSATDILLGNLPRPPAAAILYRALADLYLKIDGYH 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00673 543 FunFam Zinc finger family protein 217 299 - -
Trre3g00673 543 Pfam Las17-binding protein actin regulator 409 533 IPR007461 -
Trre3g00673 543 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 231 293 IPR017455 -
Trre3g00673 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 302 IPR013083 -
Trre3g00673 543 SMART fyve_4 223 294 IPR000306 GO:0046872
Trre3g00673 543 CDD SYLF_FYVE 334 535 - -
Trre3g00673 543 Pfam FYVE zinc finger 227 292 IPR000306 GO:0046872
Trre3g00673 543 SUPERFAMILY FYVE/PHD zinc finger 226 305 IPR011011 -
Trre3g00673 543 PANTHER SH3YL1 PROTEIN 192 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00673 Trre-Chr3 4618997 4622385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00673 228 311 EF-hand Containing Proteins AT3G14270 34.831 3.46e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00673 K20523 - gmx:100785341 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00673 3 4618997 4622385 Trre3g00673 3 4618997 4622385 ECH