Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00463 ATGGAAGCTCACATGACTGATTCAGACTATGAGTCTTCCAGTGAGAGCAGCAGCAGTGAGGATCAAGAGGATATTGATTTTCCATATGGCGGCCAAGCTCGGAGCATATTGTCGAGTTTAGAGGAAAGCATCGGAAGGATCGATGATTTTCTCTCGTTTGAGAGGACATTTGCTTATGGCGATGTTGTCTGCTCCTTGTCAGACCCATCTGGACAGATGGGGAGGGTTGTAAGTGTTGATATGTTGGTTGATTTGGAAAATGTTCAAGGAAACATATTAAAAAATGTCAACTCCAAGAAACTTCTGAAGATTCGCTCCATTTCAGAAGGTGATTGTGTAATTAAAGGGTCGTGGCTTGGTCAGGTTCATAGGGTAGTGGACAGATTAACCGTATTGTTCGATGACGGGACTAAATACGAAATCATTACCTTGGAAAAAGATAAGATTTTACCACAAACTCCTAATTTTCTTGAAGATTCGCAGTATCCATACTATCCGGGGCAAAGAGTGAAAGTTAAGTCCTCGACCGCTTCTAAATCAGCTAGATGGCTATGTGACAATTGGAGAGACAATCACGATGAAGGAACTGTATGTTCTGTGGAAGCCGGTTTGGTGTATGTTAATTGGCTTTCGTCGGTTCCTTTAGGTTCTAATATGAATGCAAATGCTCCTCCGTGTTGGCAAGATTCCAAAAACTTGACCTTGTTATCGTGTTTTTCACACGCAAACTGGCAACTCGGTGACTGGTGCATGCTCCCAGTTGCAGACCAAAAGGAACAAGTCGAAAAGATGATTCGAGATTCATCTGATAGGTATCTTCCTAATAAGCATAATATGGCTAGGGAATATAGGAGAAGAAACCTTCACTCTAGCATGGGGGAATTGTTTATAATTGGAAGGATAAAGACGAAAGTTGATATTATTTGGCAAAATGGTGAACATACTTTCGGGTCAGATCCACATAATCTAGTTCCTGTGAATGTCATAAACACTCATGAATTTTGGCCTCATCAGTTTGTGATGGAAAAAGGTACTTCTGATTCTGATGATGATAAGTCTAGCAGCAATCAAAGATGGGGTGTCGTTCTATCGTTTGATGCAAAAGAGCATACGGTAAACGTAGAATGGAGAACAGTTCTTGCATCCGAGTCAGGTGATTTTGCTGGAGAAACAACGATGGAAACTGTGAGTGCCTATGAACTCGTTGAGCACCCTGATTTTTCCTGTTGTTTTGGTGATATTGTGTTCAAGGCGGCTCAAAAACAGCTTGGTTATCTAGCTGTAAGAAATGATGCAAATTCAATGAGTGACTTGAATGTGGAAGCTCCTCTGAAAAACCTGGATCAAATCGGTTATAAGAATAAGTCTCGAGATAACTATCACCTGTCCTGTATTGGCAATGTTACTGGTTTCAAAGATGGTCATGTGGAGGTGAAATGGGCTACTGGTTTGACAACCAAGGTTGCACCCTATGAAATTTTCCGGGTTGATAAACATGAAGGTTCAACCGCAACTCCTGTTTCTTATGAAACAAATATTGAGGAGTTGGCTCAAGAGATTGTTGAACATGGAATTCTACCTTCTGAGCAGAAAGGCTTGTCAGATTGTAATGTCGATAAAGATAAATGTGAAAAGCATCCAGGAGAGAGTAGTTCATTTTCCCTTCCTCGAGCTGCCCTTGAACTTCTCTCAAGAATTAAAGCCGGAATATTCCAAAAACTTGGCGTGACATCCTTTTATGGAGCTGTTTCCCCAGTCTCTACATTTGAAGAGGGAAATGCATCCGATTTTCTCGACAAGACAGATTTGGAAACTTGTGGCCATGACACTGATTCATATCCTGTGAGCAGGTTGCAGTCTACTGAAGACTCAACTCCATACGATGAAGTTATTAGGATTCATGAGAGGAGTGATGTTCCGATTTCTTCAGACAGCAAAAGTCCAGACCAGTCGAAGCAGTTTGATGTAATTGATAATTGCTCAGACCACCACTTTTTTAACGAGGGAAAAGGGCTGCCGTTATCTCAGGTTAAGAAAGATTGGGTGAAAAAGGTACAACAAGAATGGAGCATGCTGGAGAAAAATCTTCCTGAAACCATTTATGTCCGTGTTTTCGAAGAAAGAATGGATCTCATGCGAGCAGCCATTGTTGGTGCGTCAGGGACACCTTATCAGGATGGCTTGTTTTTCTTCGATATATGTTTCCCTCCCGAGTATCCCAGTGAACCACCTATGGTGCACTACATTTCTAGTGGGCTACGATTAAATCCTAATTTATACGAGTCAGGGAAAGTGTGTTTGAGTCTCCTAAACACGTGGAGTGGTACCGAGACTGAAGTGTGGAACCCTGGAGCTTCGACAGTTCTTCAAGTCCTTCTCTCGCTACAAGCTCTCGTCCTTAATGAGAAGCCTTATTTCAACGAGGCTGGATACGACCAACAAATTGGAAGAGCCGAAGGAGAGAAAAACTCAGTTAGTTACAATGAGAATGCTTTCCTTCTCACCTACAAATCCATGCTGTATCTATTAAGAAAGCCGCCGGAGCATTTCGAGACATTGGTGGAAGAACACTTTCGACAACGCTCCAAACATATACTTATGGCTTGTAAGGCATGTCTTGAAGGAAGTCCTATTGGAGGCGAAAAAACTGAGCATGAAAACCAGAAAGGAACTTCTACAGGATTTAAACTTATGCTTGCTAAACTCTTCCCTAAGCTTGTAGAGGCATTTTCTGAAAAGGGTATTGATTGCTCTCAGTTTGTTGACACGAAAAAGTAA 2778 0.4176 MEAHMTDSDYESSSESSSSEDQEDIDFPYGGQARSILSSLEESIGRIDDFLSFERTFAYGDVVCSLSDPSGQMGRVVSVDMLVDLENVQGNILKNVNSKKLLKIRSISEGDCVIKGSWLGQVHRVVDRLTVLFDDGTKYEIITLEKDKILPQTPNFLEDSQYPYYPGQRVKVKSSTASKSARWLCDNWRDNHDEGTVCSVEAGLVYVNWLSSVPLGSNMNANAPPCWQDSKNLTLLSCFSHANWQLGDWCMLPVADQKEQVEKMIRDSSDRYLPNKHNMAREYRRRNLHSSMGELFIIGRIKTKVDIIWQNGEHTFGSDPHNLVPVNVINTHEFWPHQFVMEKGTSDSDDDKSSSNQRWGVVLSFDAKEHTVNVEWRTVLASESGDFAGETTMETVSAYELVEHPDFSCCFGDIVFKAAQKQLGYLAVRNDANSMSDLNVEAPLKNLDQIGYKNKSRDNYHLSCIGNVTGFKDGHVEVKWATGLTTKVAPYEIFRVDKHEGSTATPVSYETNIEELAQEIVEHGILPSEQKGLSDCNVDKDKCEKHPGESSSFSLPRAALELLSRIKAGIFQKLGVTSFYGAVSPVSTFEEGNASDFLDKTDLETCGHDTDSYPVSRLQSTEDSTPYDEVIRIHERSDVPISSDSKSPDQSKQFDVIDNCSDHHFFNEGKGLPLSQVKKDWVKKVQQEWSMLEKNLPETIYVRVFEERMDLMRAAIVGASGTPYQDGLFFFDICFPPEYPSEPPMVHYISSGLRLNPNLYESGKVCLSLLNTWSGTETEVWNPGASTVLQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENAFLLTYKSMLYLLRKPPEHFETLVEEHFRQRSKHILMACKACLEGSPIGGEKTEHENQKGTSTGFKLMLAKLFPKLVEAFSEKGIDCSQFVDTKK 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00463 925 FunFam Probable ubiquitin-conjugating enzyme E2 23 642 914 - -
Trre3g00463 925 Pfam Ubiquitin-conjugating enzyme 685 831 IPR000608 -
Trre3g00463 925 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 4 917 - -
Trre3g00463 925 SMART ubc_7 683 840 - -
Trre3g00463 925 Gene3D Ubiquitin Conjugating Enzyme 643 917 IPR016135 -
Trre3g00463 925 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 680 840 IPR000608 -
Trre3g00463 925 MobiDBLite consensus disorder prediction 1 25 - -
Trre3g00463 925 CDD UBCc 682 835 IPR000608 -
Trre3g00463 925 SUPERFAMILY UBC-like 675 848 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00463 Trre-Chr3 3055038 3058459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00463 21 919 Miscellaneous Gene Families AT2G33770 49.615 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00463 K10581 - gmx:100805463 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00463 3 3055038 3058459 Trre3g00463 3 3055038 3058459 ECH