Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00451 ATGAACTCATTGAACTGGAAGCTTCTTCGCAGAATCACCATTGATATTGGAACCATAAACAGATCATACTACACCAGCAGAACAAAGAAACCGAGTCTCTACTCTAAAATCAGTCCACTCGGAAATCCAACCACTAGCGTTGTTCCACAGCTCGACGATTGGGTCTACAAAGGTAACAAGGTCAGCGTTGGAGAGCTTCAGCGCATTGTTCGTGATCTTCGTAAACGTAGTAGATTCTCCCAAGCTCTCCAGGTATCTGAGTGGATGAATAAGAATGGTGTGTGCATATTTTCTCCGGTTGAACATGCGGTGCATTTGGATCTTATTGGCAAGGTTCACGGATTTGTTTCTGCAGAAACCTATTTTAATAACTTGAAAGATATCGACAGAAATGAGAAGACATATGGTGCTCTTTTGAATTGCTATGTACGTCAGCGCCAAATTGATAAGTCTCTTTCCCATTTGCGGAAAATGAAGGAGTTGGGGTTAGCTTCGTCAGCTTTAACCTATAATGGCATTATGTGTCTGTATACAAATATCGGACAGCATGAGAATGTTGCTGGTGTGCTGACTGAGATGAAGGAAAAAAATGTTTTACCGGACAACTTTAGCTACAGAATCTGTTTAAATTCTTATGGTGTGAGGTCTGATATTGATGGAATGACGAGAATATTGAAAGAGATGGAGAGTCAACCACACATTGTGATGGACTGGAACACTTATTCTGTCGTGGCCAATTTCTATATAAAAGCAGGACTTTCAAGTGAGGCAGTTAATGCTCTAAGGAAATGTGAGGAGAGGATAGTTCACAAAGATGGAGAGGGTTACAATCATCTTATCTCTCTTTACGCTCGCCTTGGAAAAAAGAATGAGGTCCTAAGACTATGGGATATGGAGAAAAGTGCTTGCAAGAGATGCATAAACAGGGATTTTATAACCATGTTAGAATCTCTGGTAAAGCTTTCCGAGTTTGATGAAGCTGACAAGATACTCGAGGAATGGGAATCCTCTGGTAACTGTTATGATGTTGGAGTTCCAAATGTGGTAATTGTTGGGTACGCTGAAAAAGATTTTCCTGAGAAAGCAGAAGCCATACTTGAAGATTTACGGAAGAAGGGAAAGGCCACTAACCCAAACTCTTGGGTTCTAGTGGCAGGTCGATACTTGCATAAGGGTGAGATGGAGAAAGCATTTGGGTGCTTGAAAATTGCCCTCCCATTGTACTCTGGAAATAAAAAATGTAAGCCTAACCAAACAGTGATTGCGGCTCTATATAGTTGGATTGCTGATCATGCTTGTGTTGAAGATGCAGAAGCTTTGGTGAGCTTATTGAGAAATGTCCAAAACAATAGACACATGTATCATGCCCTGATCAAGGCTTATGTGCGAGCTGGTAAAGAAGTGGAGGGGGTCTTGGAACGAATGAAAGCAGATAACGTTAACGAAACTGGAAAAATTAAAGAAATTCTTGACATGAGGAAGGAAGGAAAATTGTAA 1497 0.4088 MNSLNWKLLRRITIDIGTINRSYYTSRTKKPSLYSKISPLGNPTTSVVPQLDDWVYKGNKVSVGELQRIVRDLRKRSRFSQALQVSEWMNKNGVCIFSPVEHAVHLDLIGKVHGFVSAETYFNNLKDIDRNEKTYGALLNCYVRQRQIDKSLSHLRKMKELGLASSALTYNGIMCLYTNIGQHENVAGVLTEMKEKNVLPDNFSYRICLNSYGVRSDIDGMTRILKEMESQPHIVMDWNTYSVVANFYIKAGLSSEAVNALRKCEERIVHKDGEGYNHLISLYARLGKKNEVLRLWDMEKSACKRCINRDFITMLESLVKLSEFDEADKILEEWESSGNCYDVGVPNVVIVGYAEKDFPEKAEAILEDLRKKGKATNPNSWVLVAGRYLHKGEMEKAFGCLKIALPLYSGNKKCKPNQTVIAALYSWIADHACVEDAEALVSLLRNVQNNRHMYHALIKAYVRAGKEVEGVLERMKADNVNETGKIKEILDMRKEGKL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00451 498 Pfam PPR repeat 276 297 IPR002885 -
Trre3g00451 498 Pfam PPR repeat 347 373 IPR002885 -
Trre3g00451 498 Pfam PPR repeat 313 338 IPR002885 -
Trre3g00451 498 Gene3D Tetratricopeptide repeat domain 411 496 IPR011990 GO:0005515
Trre3g00451 498 Gene3D Tetratricopeptide repeat domain 192 310 IPR011990 GO:0005515
Trre3g00451 498 Gene3D Tetratricopeptide repeat domain 311 410 IPR011990 GO:0005515
Trre3g00451 498 SUPERFAMILY TPR-like 245 413 IPR011990 GO:0005515
Trre3g00451 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Trre3g00451 498 FunFam Pentatricopeptide repeat-containing protein mitochondrial 63 274 - -
Trre3g00451 498 NCBIfam pentatricopeptide repeat 134 163 IPR002885 -
Trre3g00451 498 NCBIfam pentatricopeptide repeat 169 201 IPR002885 -
Trre3g00451 498 Gene3D Tetratricopeptide repeat domain 54 191 IPR011990 GO:0005515
Trre3g00451 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Trre3g00451 498 PANTHER OS12G0527900 PROTEIN 29 483 - -
Trre3g00451 498 Pfam Pentatricopeptide repeat domain 155 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00451 Trre-Chr3 2989720 2991949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00451 32 446 EF-hand Containing Proteins AT1G02150 32.933 7.64e-77 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00451 - - lja:Lj6g3v2043070.1 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00451 3 2989720 2991949 Trre3g00451 3 2989720 2991949 ECH