Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00396 ATGTCTTTCTCTACCACCACCATAATTCCACCACGTATCTTGTTGGGAAAAACAACAACCACCTACAACAACAATGATGCATTCACACTCACCCACGTTGTACTACCACAACCACTTGTACGAGGTTCATGTTCCATCTCACTCTCAAGAACCAGCTACATTGGTTTTGTTTCAAAATTCGACCAAACTTGTTCTTCTTCTTCACCTATCATGGAAGAAAAAGATGATGATCAGAAAAAATTGAATCTTTTCTCCAAATCAGAACAAGAAAAAGATGATTATTCCAAGGAATTGGATGTTGCTGTCAGAGCTGTTCAAATGGCTTGTTCACTTTGTCAGAGAGTGCAGGATACTTTAATTTCCAAAACCAATCATCAGGTTCAATCAAAAGATGATAATTCTCCTGTTACTGTTGCTGATTGGAGTGTCCAAGCAGTTGTCAGCTGGATATTATCCGAGTGTCTAGGAAGCGAAAATATCTCAATTGTTGCCGAAGAAGATGTTCAAACTCTCTCCAAATCTAATGCATCAGAATTATTAAACTCCGTGGTTAAAACTGTGAATGAATGCCTAGCTGACGCACCTCGATTTGGGGTTCAGAAGCCAAAATCATCACTTGGGACTTCAGAAGTTCTTGATATCATTAGTCGTTGTAACTCAACCGGTGGTCCCTCTGGAAGATTTTGGGTATTGGATCCTGTCGATGGCACACTCGGGTTTGTTCGCGGTGATCAATACGCTGTAGCTCTAGCGCTCATAGAGGATGGCGAAGTAGTGCTTGGTGTTCTTGGATGTCCTAACTATCCAATGAGGAAAGAATGGTTAGGTTATCAGCATCGGTATCATAGGATAGTGTCGAAGTTGACTCCTCCGAATTCTGATAGTTGGAACAAAGGTTGTGTGCTATATGCTAAAAAGGGTAGTGGGAAAGCTTGGATGCAACCACTGCTAAATGTGAATAAGATGTTTGTGTGGCCAAACCATGCAAAACAAGTTTTTGTTTCTTCTATCGACAATCCAGCATTGGCTACGTTTTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACTGCAGGACTTGCTCACAGTGTTGGTCTCAGGAAACAACCATTAAGAGTATACAGCATGGTGAAATATGCAGCAATAGGTCGTGGAGATGCCGAGGTTTTCATGAAATTTGCAAGGGCAGGTTACAAGGAGAAAATATGGGATCATGCTGCAGGTGTTATCATCATACAAGAAGCTGGTGGAGTGGTAACAGATGCTGGAGGATGTCCCCTAGACTTCTCAAAAGGCTTGTATTTAGAAGGCTTAGATCGCGGTATAATTGCTTGTTCTGGAGCCTCATTACATGGAAAGATCATTGAAGCTGTTGATGCTAGCTGGGGATCCTCTAGCCTTTGA 1410 0.4184 MSFSTTTIIPPRILLGKTTTTYNNNDAFTLTHVVLPQPLVRGSCSISLSRTSYIGFVSKFDQTCSSSSPIMEEKDDDQKKLNLFSKSEQEKDDYSKELDVAVRAVQMACSLCQRVQDTLISKTNHQVQSKDDNSPVTVADWSVQAVVSWILSECLGSENISIVAEEDVQTLSKSNASELLNSVVKTVNECLADAPRFGVQKPKSSLGTSEVLDIISRCNSTGGPSGRFWVLDPVDGTLGFVRGDQYAVALALIEDGEVVLGVLGCPNYPMRKEWLGYQHRYHRIVSKLTPPNSDSWNKGCVLYAKKGSGKAWMQPLLNVNKMFVWPNHAKQVFVSSIDNPALATFCEPVEKANSSHSFTAGLAHSVGLRKQPLRVYSMVKYAAIGRGDAEVFMKFARAGYKEKIWDHAAGVIIIQEAGGVVTDAGGCPLDFSKGLYLEGLDRGIIACSGASLHGKIIEAVDASWGSSSL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00396 469 CDD PAP_phosphatase 97 460 - -
Trre3g00396 469 PRINTS Inositol monophosphatase superfamily signature 229 245 IPR000760 -
Trre3g00396 469 PRINTS Inositol monophosphatase superfamily signature 402 426 IPR000760 -
Trre3g00396 469 PANTHER PHOSPHATASE 84 467 - -
Trre3g00396 469 Gene3D - 333 463 - -
Trre3g00396 469 Gene3D - 93 323 - -
Trre3g00396 469 FunFam PAP-specific phosphatase HAL2-like 333 466 - -
Trre3g00396 469 SUPERFAMILY Carbohydrate phosphatase 93 462 - -
Trre3g00396 469 ProSitePatterns Inositol monophosphatase family signature 1. 229 242 IPR020583 -
Trre3g00396 469 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 94 468 IPR006239 GO:0006790|GO:0008441
Trre3g00396 469 Pfam Inositol monophosphatase family 132 463 IPR000760 -
Trre3g00396 469 ProSitePatterns Inositol monophosphatase family signature 2. 405 419 IPR020550 GO:0046854
Trre3g00396 469 FunFam PAP-specific phosphatase HAL2-like 92 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00396 Trre-Chr3 2592079 2596266 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00396 K01082 - gmx:100776247 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00396 3 2592079 2596266 Trre3g00396 3 2592079 2596266 ECH