Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00317 ATGAGTTCATTTTCTCTATTGTGTGTCTTGGGCTTAGTACTCATTACTTGTCATGTTGCACTTGCCCAAGACTCGCCGACTGACTATGTGAACGCCCACAACGCAGCAAGATCTGAAGTTGGTGTTCCAAATATTGCTTGGGACAACACCGTAGCTGCGTATGCACAAAACTATGCTAATCAACACAAGGCTGATTGTCGATTGGTCCACTCGGGTGGACGTTATGGGGAGAATCTCGCGGGGAGCACCGGTGACTTGAGTGGCACAGATGCTGTGAAATTGTGGGTGAATGAGAAAAGTAACTACAATCATGGTAGTAACTCATGTGCTACTGGTGCTGTATGTGGCCATTATACTCAGGTGGTATGGAAAAATTCAGTACGTGTTGGATGTGCCAAAGTGAGATGTAACAATGGAGGAACATTCATTACATGCAATTATGATCCCCCTGGCAACTATGTTGGTCAAAGCCCATACTAA 480 0.4521 MSSFSLLCVLGLVLITCHVALAQDSPTDYVNAHNAARSEVGVPNIAWDNTVAAYAQNYANQHKADCRLVHSGGRYGENLAGSTGDLSGTDAVKLWVNEKSNYNHGSNSCATGAVCGHYTQVVWKNSVRVGCAKVRCNNGGTFITCNYDPPGNYVGQSPY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00317 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Trre3g00317 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Trre3g00317 159 PRINTS Allergen V5/Tpx-1 family signature 91 104 IPR001283 -
Trre3g00317 159 PRINTS Allergen V5/Tpx-1 family signature 45 63 IPR001283 -
Trre3g00317 159 Pfam Cysteine-rich secretory protein family 30 147 IPR014044 -
Trre3g00317 159 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Trre3g00317 159 FunFam Putative pathogenesis-related protein 1 23 159 - -
Trre3g00317 159 Gene3D CAP 24 159 IPR035940 -
Trre3g00317 159 CDD CAP_PR-1 26 159 - -
Trre3g00317 159 SUPERFAMILY PR-1-like 6 159 IPR035940 -
Trre3g00317 159 SMART SCP_3 24 155 IPR014044 -
Trre3g00317 159 ProSitePatterns CRISP family signature 1. 116 126 IPR018244 GO:0005576
Trre3g00317 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 28 156 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00317 Trre-Chr3 2100268 2100747 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00317 K13449 - gmx:100806194 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00317 3 2100268 2100747 Trre3g00317 3 2100268 2100747 ECH