LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g00315	ATGAGTTCATTTTCTCTATTGTGTGTCTTGGGTTTATTTCTCATTATTGGTCATGTTGCACTTGCACAAAACTCACCAACAGACTATGTCAATGCCCACAACGCAGCAAGATCCGAGGTTGGTGTCCCAAATATTGTTTGGAACGACACTATAGCAGATTCTGCACAAAACTATGCTAATGAACGGAAGGCGGATTGTCAACTAATCCACTCCGGTAGCGTTTATGGGGAGAATCTCGCAGGATGCACTGGCGACTTGAGTGGCACGGATGCCGTCAAGTTGTGGGTGGATGAGAAAAGCGACTATGATTATGGTAGTAACTCATGTGCTGATGGTGCTGGTAGTAATGTTGCACATGCCCAAGACTCACCACTAGACTATGTTAAAGCCCACAACAAAGCAAGATCAGCGGTTCAAACCAATGTTAAACTTCCAAACCTTGTTTGGGACAACAAAGTTGCTGCTTATGCACAAAATTATGCTAATCAACGCAAGGATTGTCAGCTGGTCCACTCCGAAACTGAGCGATACGGAGAGAATATCGCGGAGAGCAGCGGTGACATGAATGGCACAGAAGCAGTGAAGTTGTGGGTTGATGAAAAACCATACTATGATTATAATAGTAACTCATGTGTTAATGGTGAAATGTGTGGCCATTATACTCAAGTTGTTTGGAGAAAATCACTACGTATTGGATGTGCTAAAGTCAAATGTGACAATGGAGGCACATTTATCACTTGCAACTATGACCCTCCTGGCAATTATGTTGGTGAAAGACCATACTAA	786	0.43	MSSFSLLCVLGLFLIIGHVALAQNSPTDYVNAHNAARSEVGVPNIVWNDTIADSAQNYANERKADCQLIHSGSVYGENLAGCTGDLSGTDAVKLWVDEKSDYDYGSNSCADGAGSNVAHAQDSPLDYVKAHNKARSAVQTNVKLPNLVWDNKVAAYAQNYANQRKDCQLVHSETERYGENIAESSGDMNGTEAVKLWVDEKPYYDYNSNSCVNGEMCGHYTQVVWRKSLRIGCAKVKCDNGGTFITCNYDPPGNYVGERPY	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g00315	261	FunFam	Putative pathogenesis-related protein 1	121	261	-	-
	Trre3g00315	261	SUPERFAMILY	PR-1-like	24	119	IPR035940	-
	Trre3g00315	261	ProSitePatterns	CRISP family signature 2.	244	255	IPR018244	GO:0005576
	Trre3g00315	261	SUPERFAMILY	PR-1-like	125	261	IPR035940	-
	Trre3g00315	261	CDD	CAP_PR-1	124	261	-	-
	Trre3g00315	261	PRINTS	Venom allergen 5 signature	147	165	IPR002413	-
	Trre3g00315	261	PRINTS	Venom allergen 5 signature	216	235	IPR002413	-
	Trre3g00315	261	PANTHER	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	28	113	IPR001283	-
	Trre3g00315	261	SMART	SCP_3	122	257	IPR014044	-
	Trre3g00315	261	SMART	SCP_3	24	119	IPR014044	-
	Trre3g00315	261	Pfam	Cysteine-rich secretory protein family	30	119	IPR014044	-
	Trre3g00315	261	Pfam	Cysteine-rich secretory protein family	129	249	IPR014044	-
	Trre3g00315	261	ProSitePatterns	CRISP family signature 1.	218	228	IPR018244	GO:0005576
	Trre3g00315	261	Gene3D	CAP	24	122	IPR035940	-
	Trre3g00315	261	Gene3D	CAP	124	261	IPR035940	-
	Trre3g00315	261	PRINTS	Allergen V5/Tpx-1 family signature	217	233	IPR001283	-
	Trre3g00315	261	PRINTS	Allergen V5/Tpx-1 family signature	147	165	IPR001283	-
	Trre3g00315	261	PRINTS	Allergen V5/Tpx-1 family signature	193	206	IPR001283	-
	Trre3g00315	261	PRINTS	Allergen V5/Tpx-1 family signature	244	257	IPR001283	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g00315	Trre-Chr3	2091931	2096340	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g00315	K13449		-	gmx:100805116	219.935

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre3g00315	3	2091931	2096340	Trre3g00315	3	2091931	2096340	ECH