Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00287 ATGACCTTTATACCCTGCATATCTTTTTCTTTTTCCCCTCATATCCAACTTGGTAAACTCGCGCACGCACAAATCACAACACAGGAAGGGAAAGACGCAGAACGCAAACACAAACCCGCCACACACACCACCACCGCCCTAACCACCATCGACCGCCACGGTCACACTACCGCGACCACCGGCCGTACCACTACAACACGTCGATCACACCATCTCGCTTCTCAGATTAAGGAGCGTGATTTGAACATAAAGATGGAAATTAGTAGCATCAAAGATGCATTTGATCGTGTGGCTAAGAAGCAAAAGTTATGTTCTTCCAAATCTGAAGAAACTGTTGACCGGGTAGGGCGTGAAATTGAGCAGGCATTGGCAACACTTCAGTCCCCTCATGATCCCTCAACTCAAGCTGACCAGAAATCTGTTCTTACAGAACTTAAGTCAAAGCTCAATGCTATTGGGTCATTTCAACAGTTAGAAGGACTGAATAAGGAATTGAACTCAAGTCTTGCAAAGTATCAAAAACTTCTTGAAAAATTGTTAAACCCTGACATCTCAAAGGCATACAGAAATGTGGAATTTGATACTCATATTATCAATCAGATCATTGCAAGCCACTTTTACCGTCAAGGTTTATTTGATCTTGGAGATAGCATCATAAATGAGGCTGGAGAGCCTAATTCAACTGCACTTAGATCTCAATTCTTGGAAATGCACCAGGTTATTGAAGCCATGAGGAGTAGAAACCTTCAGCCTGCTCTCACATGGGTCACTGCTAATCGTGAAAAACTTATCCAGATTGGTTCCAATCTTGAACTTAAGCTTCACACACTGCAGTATGTAGAGATTGTGCAGACTGGAACCCAAGCTGATGCCCTAAAGTATACCAGAACTTATCTTCATCATTTTGCTGATCGCTATAAGGATGACTTCCAAAAGCTTATGGGTTGCCTCTTGTATGTAAGAAGGCTAGAGAAATCCCCTTATGCTGAGTTGCTGTCCCCAACTCATTGGGAGGTGACAACTGAAGAGCTGGCACGGCAGTTCTGTTCTCTTATGGGACAGTCTTATGAGAACCCACTGAATGTGGTATTTACAGCTGGAGTTGAAGGGTTGCCCACACTGTTAAAGTTGGCAAATGTAATGGCGGCAAAGAAGCAAGAATGGCAGGAAATGAAACAGTTGCCAGTGCCTGTAGAATTGGGAAAGGAATTTCAGTTCCATTCAATTTTTGTTTGCCCTGTGAGTAGGGATCAAGGTAGCGACGAGAATCCTCCAATGCTGCTGCCATGTTTACATGTCCTTTGCAAGCAATCAATTATGAAGTTATCAAAAAATAGCACAAGAACATTCAAGTGTCCATATTGTCCGGCAGAAGCTACAGTTGCACACTGCAGACAAGTGTATTTCTGA 1410 0.4319 MTFIPCISFSFSPHIQLGKLAHAQITTQEGKDAERKHKPATHTTTALTTIDRHGHTTATTGRTTTTRRSHHLASQIKERDLNIKMEISSIKDAFDRVAKKQKLCSSKSEETVDRVGREIEQALATLQSPHDPSTQADQKSVLTELKSKLNAIGSFQQLEGLNKELNSSLAKYQKLLEKLLNPDISKAYRNVEFDTHIINQIIASHFYRQGLFDLGDSIINEAGEPNSTALRSQFLEMHQVIEAMRSRNLQPALTWVTANREKLIQIGSNLELKLHTLQYVEIVQTGTQADALKYTRTYLHHFADRYKDDFQKLMGCLLYVRRLEKSPYAELLSPTHWEVTTEELARQFCSLMGQSYENPLNVVFTAGVEGLPTLLKLANVMAAKKQEWQEMKQLPVPVELGKEFQFHSIFVCPVSRDQGSDENPPMLLPCLHVLCKQSIMKLSKNSTRTFKCPYCPAEATVAHCRQVYF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00287 469 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 233 290 IPR006595 -
Trre3g00287 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 468 IPR013083 -
Trre3g00287 469 Pfam RING-type zinc-finger 412 453 IPR027370 -
Trre3g00287 469 Pfam CTLH/CRA C-terminal to LisH motif domain 233 374 IPR024964 -
Trre3g00287 469 SMART ring_2 412 455 IPR001841 -
Trre3g00287 469 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 82 468 IPR045098 GO:0004842|GO:0043161
Trre3g00287 469 ProSiteProfiles Gid-type RING finger profile. 412 455 IPR044063 GO:0061630
Trre3g00287 469 ProSiteProfiles LIS1 homology (LisH) motif profile. 194 226 IPR006594 GO:0005515
Trre3g00287 469 SMART toby_final6 286 380 IPR013144 -
Trre3g00287 469 SMART ctlh 233 290 IPR006595 -
Trre3g00287 469 FunFam Regulator of gluconeogenesis Rmd5 404 468 - -
Trre3g00287 469 CDD dRING_Rmd5p-like 410 458 IPR037683 -
Trre3g00287 469 Coils Coil 155 178 - -
Trre3g00287 469 SUPERFAMILY RING/U-box 406 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00287 Trre-Chr3 1918141 1926230 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00287 K23333 - gmx:100782483 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00287 3 1918141 1926230 Trre3g00287 3 1918141 1926230 ECH