Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06189 ATGAACAAGCGACCAAGGAACACCGTCTACAAGCCCCTTCGCGATCTCTCCAATCGAGAGCTTGGCGAGTTACCCGCCAGAGTTTTCCCTAACCGTCTCGCCGCCTCCGAGGATCTTGTACTTCGACTTGAAGTATTCAGAAAGCTCGAAAGGCACAGAGGTTGTGTGAACACGATATGCTTCAATGCAGATGGCGACATTCTCGTTTCAGGTTCTGATGACAGGAGGATTATTCTCTGGGATTGGCAAACTGGTCGTAGTAAACTTTCTTTCCATTCTGGTCATAGTAACAATGTTTTTCAGGCCAAGTTTATGCCGCACTGTGATGATCGAAGCATTATCACTTGCGCTGCTGATGGCCAGGTGAGACATGCTCAAATTCTTGAAAAGGAAGGAGTGGAAACCAAGTTGTTGGGCAGTCATCAAGGACGGGCTCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATTTATTTTATACCTGCGGTGAAGATGGATTAGTACAGCATTTTGATCTGAGAACTGGGACTGCAACAGAACTTTTTACCTGCAAGCCACTTAAGGATAGATGGAATTATACGTCAGTCTTCCAACTTAATACAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGGTCTGATGAGTATACGCGACTTTTTGATATCCGCAAGTATAAATGGGACGCATCAACTGATTTTGGTCAACCGATCGACTACTTTTGCCCTCCGCACTTGATTGGAGATGAGCGAGTAGGAATAACAGGCTTGGCCTTTTCTGAACAAAGGGAGCTTCTTGTGTCCTACAATGATGAATTTATTTACCTTTTTACACAAGATATGGGTTTGGGACTGGATCCTGTTCCTGGGTCCCCTATATCTGAAGATAGTGATACAAGTGAAACGGGAGGTAGTCATGGATCTGTACAATCTCCATCAAAGATGGATGCTGATGAGAAAATCGCCCCTCAAGTTTTTAAGGGACACAGGAATTGCGAGACAGTGAAGGGTGTTGGTTTCTTTGGGCCTAATTGTGAGTATGTGGTGAGTGGATCAGACTGTGGTCGAATTTTCACATGGAGGAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGACAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAACAGTTCTTGCAAGCAGCGGCATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTCGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGGTTCTCATATTTGATGAAATTCGTTGGTTTGAGAGTGATGACGACGACGACGATGAGGATAATGATGATGATATGTTTGATGATGAGGATGATATGTTTGATGAGGATGATATGGATGATGATAATGAGGATGACGATGAATGTTGTGACGATGATGATGATGATGATGTCGATGAATATGACGAAGGCGGTTATGTCAATGATTGTAATGACGATGATGTCAATACTGGTAAACCCAAGGCTAGGGGCTGGATGTACCAGATAGATTCTCCGGAAGACTTGATGTTGCAACTGTTTTCACTTCCAAGACGGAGGGTTAGGACAGAAACCAATGCAGAGCGCTCAACTGCAACTGCAGATCGAGAACTTTTAGAGTTGATATTGACATTCAATACTATTAGTGACGATTCTACTGATGATGATGGTGATGATAATGATGATGGAGATGCAACCAACCAAGATGACTTGTTCAGTTGA 1737 0.4375 MNKRPRNTVYKPLRDLSNRELGELPARVFPNRLAASEDLVLRLEVFRKLERHRGCVNTICFNADGDILVSGSDDRRIILWDWQTGRSKLSFHSGHSNNVFQAKFMPHCDDRSIITCAADGQVRHAQILEKEGVETKLLGSHQGRAHKLAIEPGSPHLFYTCGEDGLVQHFDLRTGTATELFTCKPLKDRWNYTSVFQLNTIAIDPRNPNLFAVAGSDEYTRLFDIRKYKWDASTDFGQPIDYFCPPHLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGLDPVPGSPISEDSDTSETGGSHGSVQSPSKMDADEKIAPQVFKGHRNCETVKGVGFFGPNCEYVVSGSDCGRIFTWRKKGGQLIRVMEADKHVVNCIESHPHTTVLASSGIEHDIKIWTPKALEKATLPKNIEQVLIFDEIRWFESDDDDDDEDNDDDMFDDEDDMFDEDDMDDDNEDDDECCDDDDDDDVDEYDEGGYVNDCNDDDVNTGKPKARGWMYQIDSPEDLMLQLFSLPRRRVRTETNAERSTATADRELLELILTFNTISDDSTDDDGDDNDDGDATNQDDLFS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06189 578 Pfam WD domain, G-beta repeat 368 404 IPR001680 GO:0005515
Trre1g06189 578 Pfam WD domain, G-beta repeat 47 81 IPR001680 GO:0005515
Trre1g06189 578 MobiDBLite consensus disorder prediction 289 317 - -
Trre1g06189 578 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 14 482 IPR045151 -
Trre1g06189 578 SMART WD40_4 42 81 IPR001680 GO:0005515
Trre1g06189 578 SMART WD40_4 241 280 IPR001680 GO:0005515
Trre1g06189 578 SMART WD40_4 84 126 IPR001680 GO:0005515
Trre1g06189 578 SMART WD40_4 321 363 IPR001680 GO:0005515
Trre1g06189 578 SMART WD40_4 182 224 IPR001680 GO:0005515
Trre1g06189 578 SMART WD40_4 131 171 IPR001680 GO:0005515
Trre1g06189 578 SMART WD40_4 366 405 IPR001680 GO:0005515
Trre1g06189 578 MobiDBLite consensus disorder prediction 433 496 - -
Trre1g06189 578 MobiDBLite consensus disorder prediction 551 578 - -
Trre1g06189 578 Gene3D - 36 407 IPR015943 GO:0005515
Trre1g06189 578 MobiDBLite consensus disorder prediction 556 571 - -
Trre1g06189 578 MobiDBLite consensus disorder prediction 433 488 - -
Trre1g06189 578 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Trre1g06189 578 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Trre1g06189 578 SUPERFAMILY WD40 repeat-like 41 404 IPR036322 GO:0005515
Trre1g06189 578 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06189 Trre-Chr1 65623773 65627343 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06189 K11804 - gmx:100794236 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06189 1 65623773 65627343 Trre1g06189 1 65623773 65627343 ECH