Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06185 ATGGAGGGATTAACAGGACTTAGTCATCTATTTGTGACAATGTTTGTAGCAGGTATTGGAGCAGTTATAGCTATTCCATCAATAACAGATGTAACCATGGCTGCACTTTGCCCTGGTCAAGATCAATGCTCTCTTGCCATTTACCTCACTGGTTTTCAGCATGCTATGATTGGAGTGGGGTCAGTGGTGACGACACCATTAATTGGGAATTTGTCTGACCGCTATGGTAGGAAAGTCTTAATCACACTTCCTCTCACAGTGACTCTCATTCCTCAAGCCATATTGGCATACAGCAGGGAAACAAAATTCTTCTACGCATACTATTTGGTGAAAACTCTTGCTGCCCTTGCAGGCGAAGGCAGCTTCCATTGCCTAGCTCTTGCATATGTGGCGGACAAAGTTCCAGTTGGAAAACGTGCATCAGCATTCGGAATACTTGCTGGTGTTGGATCAGCGTCATTTGTTGGTGGAACATTAGCTGCTAGATTCTTATCCACGGCTTTGACGTTTCAGGTTGCTTCAGTGTTCTCAATGATAGCATTGGTGTACATGAGAATTTTCCTTAAGGAAAGTGAACCTATGAGGCAGCCATTGTTGAAAGAGGCGGAGGAACCATGCATTCAACAGTGTGAGGATGATATGCCTCAAAGAACATTTAAAAAACTACCTTCAATGGGGGATGTAATTTGTTTGCTCAAGTGTAGCTCTACATTCTCACAAGCAGCAATTGTTTTGCTCTTCAATAGTCTTGCTGATGGTGGCTTGATGGCTGTTTTGCTGTATTATTTGAAGGCGCGTTTTCAATACAACAAGAATCAGTTTGCCGATTTGATGATGATTTCTGGGATTGGAGCTACTCTGACACAACTATTTCTCATGCCCATATTAGTACCTACTGTAGGCGAGGAGAAGTTGCTCACAACAGGGCTCTTTGTTTCCTGCATAAATATCCTTGTGTACAGTATATCGTGGTCAGCATGGGTTCCTTATGCTCTAGCAGGTTTCTCAGTTTTAGGAGTTCTAGTGCGCCCAACTATAACCAGTATTGCTTCCAAACAAGTTGGACCTAACGAACAGGGAATGGTTCAAGGATGTCTCTCAGGAGTCACTTCTGTCGCCAACATAATTTCTCCACTAATTTTCAGTCCACTGACAGCCTTATTCCTGTCAGAAGACGCCCCATTCAATTTTCCTGGATTCAGCTTAATGTGCCTCGGGCTTATACTGATGACAGCATTTTTCCTTAGTCTAACAATTCGCCCTCCTCCTCCTCCTATTGTGGGTGACAAAGTTAGTAATAACCGCTGCACAGAAACCTTGGTCTGA 1326 0.4344 MEGLTGLSHLFVTMFVAGIGAVIAIPSITDVTMAALCPGQDQCSLAIYLTGFQHAMIGVGSVVTTPLIGNLSDRYGRKVLITLPLTVTLIPQAILAYSRETKFFYAYYLVKTLAALAGEGSFHCLALAYVADKVPVGKRASAFGILAGVGSASFVGGTLAARFLSTALTFQVASVFSMIALVYMRIFLKESEPMRQPLLKEAEEPCIQQCEDDMPQRTFKKLPSMGDVICLLKCSSTFSQAAIVLLFNSLADGGLMAVLLYYLKARFQYNKNQFADLMMISGIGATLTQLFLMPILVPTVGEEKLLTTGLFVSCINILVYSISWSAWVPYALAGFSVLGVLVRPTITSIASKQVGPNEQGMVQGCLSGVTSVANIISPLIFSPLTALFLSEDAPFNFPGFSLMCLGLILMTAFFLSLTIRPPPPPIVGDKVSNNRCTETLV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06185 441 PRINTS Tetracycline resistance protein signature 50 69 IPR001958 GO:0022857
Trre1g06185 441 PRINTS Tetracycline resistance protein signature 362 385 IPR001958 GO:0022857
Trre1g06185 441 PRINTS Tetracycline resistance protein signature 143 165 IPR001958 GO:0022857
Trre1g06185 441 CDD MFS_SLC46_TetA_like 10 417 - -
Trre1g06185 441 ProSiteProfiles Major facilitator superfamily (MFS) profile. 13 424 IPR020846 GO:0022857
Trre1g06185 441 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 7 419 - -
Trre1g06185 441 Gene3D MFS general substrate transporter like domains 7 418 IPR036259 -
Trre1g06185 441 SUPERFAMILY MFS general substrate transporter 43 420 IPR036259 -
Trre1g06185 441 Pfam Major Facilitator Superfamily 10 378 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06185 Trre-Chr1 65612877 65618524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06185 2 438 Organic Solute Cotransporters AT2G16990 42.384 1.72e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06185 - - gmx:100805770 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06185 1 65612877 65618524 Trre1g06185 1 65612877 65618524 ECH