Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06181 ATGAGTAACCAAAAAACACTTCTAGAATTTTTTGAAAAGGAAAAGCCTCTTGTACCATCTTCACCTACTTCAGGAAATGAAGAAATTCTCTCTACTGTTTCATACTGCACCTTTGTTTTCACATTCACTGACCCTTCAGAATCTCCTTCACAAAGAGACTCCAAAAGACTTCAACTTTCAAGGCTCATAGCTATGTTGAAATCCTCCAAAAAACCAGTGCATGAAAAAGTTGTAGGACCTTTAGTATCAATGATCAAAGCAAATCTTTTCAGGCCACTCCCTCCACCTACAAACCCTTCTGCTATATCAGAATTTCTTGATGAAGAAGATCCTATTTCAATATTTTCACCTTTATGGTCACATCTACAAATAGTTTATGAAATCTTACTCAGGCTTGTTAATAGCACAGACGTCAAAATACTTAGAAACTATATGGACCATTCTTTCCTCCTTAATCTGTTATCGCTATTCCAATCTGAAGATCCGAGGGAACGTGAAAGCTTGAAAAATGTGTACCACAAGATATATTCTAAGTTTGTTTGTGACCGTTCTGCGATGAGGAAATCAATGACTGATGTTTTGCTGAACTATGTTTTTGAGACTGAGAAACATTCTGGTATTGCAGATTTGCTTGAGATATGGGGAACTATTGTTAATGGCTTTACCGTGCCGCTCAAGGAAGAGCACAAGTTGTTTCTTATGAGAGTATTGATTCCTTTACATAAGACTAAAGGGATGCAAGTTTATCATAGACAACTTGCTTATTGTATATCACAGTTTGTGCAGAAGGAGCCTATGCTTGGAGGTGTTGTTGTAAGGGGAATTTTGAGATATTGGCCTGTTACAAATTGTCAAAAGGAAATTTTGCTGATTGGTGAATTGGAAGATCTTGTGGAGAATTTGGATCCTGATCAATATCGTAAATTGGCCTTGCCCATATGTACTCAGATTACAAAATGCATCAACAGTTGGAATTCTCAGGTAGCTGAAAGGGCACTATATGTTTGGAACAATGAGCAGTTCTACAAAATGGCAACAACAGGAACAGTGGAAGTACTTCCAGTGATAGTAGAAGGTGTGGAAAAGAACTTGAAGTTGCATTGGAGCAAGAGTGTTAGGCAGCTAACAGAAAGTGTGAAGGTGGTGGTGGAAGATATTGATCCAGATCTATATGCAAAAGCTCAAATGGACATAAAAGTTAAGGAATCAGAAGCACATCAAAAAGATATGAAGAGAAAAAAGACTTGGGAAAGAATTGAATTGGCAGCTTCTAAGAATCAGTTTGTCAATCCACAAAGATACATATGTGTCTCCAACTGA 1320 0.3742 MSNQKTLLEFFEKEKPLVPSSPTSGNEEILSTVSYCTFVFTFTDPSESPSQRDSKRLQLSRLIAMLKSSKKPVHEKVVGPLVSMIKANLFRPLPPPTNPSAISEFLDEEDPISIFSPLWSHLQIVYEILLRLVNSTDVKILRNYMDHSFLLNLLSLFQSEDPRERESLKNVYHKIYSKFVCDRSAMRKSMTDVLLNYVFETEKHSGIADLLEIWGTIVNGFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHRQLAYCISQFVQKEPMLGGVVVRGILRYWPVTNCQKEILLIGELEDLVENLDPDQYRKLALPICTQITKCINSWNSQVAERALYVWNNEQFYKMATTGTVEVLPVIVEGVEKNLKLHWSKSVRQLTESVKVVVEDIDPDLYAKAQMDIKVKESEAHQKDMKRKKTWERIELAASKNQFVNPQRYICVSN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06181 439 SUPERFAMILY ARM repeat 28 418 IPR016024 -
Trre1g06181 439 Gene3D - 22 421 IPR011989 -
Trre1g06181 439 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 22 421 - -
Trre1g06181 439 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 21 427 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre1g06181 439 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 20 423 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre1g06181 439 PIRSF PP2A_B56 9 437 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06181 Trre-Chr1 65584941 65586662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06181 K11584 - gmx:100802007 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06181 1 65584941 65586662 Trre1g06181 1 65584941 65586662 ECH