Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06177 ATGGCGGCGGCGACGACACCATCGTGGCAACCACAAGAGCAAGGTTTCAAAGAGATCTGCGCTCTATTGGAGCAACAGATTTCTCATTCTTCTTCCGCTGATAAGTCTCAGATTTGGAACCAAATTCAACAATACTCCAATCTTCCTGACTTCAACAATTACCTTGTCTTCATCTTTACTCGTGCTCAGGGAATATCTGTGGAGGTTCGGCAGGCTGCGGGTTTATATCTGAAGAATAACATGAAAAACGTATATAATTTAATGCAGCCTGAGTACCAGAAATACGTGAAATCAGAGTTGCTGCCTTGTCTTGGTGCAGCAGATAAACACATAAGGTCTACAACAGGAACTATTATCAGTGTTGTTGTTCAAACCGGAGGAATTTCACAGTGGCCCGAATTATTGCAAGCACTTGTAAATTGCTTGGACAGTAGTGATCTAAATCACATGGAAGGTGCGATGGATGCATTATCCAAGATTTGTGAAGATGTTCCCCAAATTCTTGACTCTGATATACCAGGGTTAGCAGAGCGTCCCATCAATATATTTCTTCCCAGATTATTTCGGTTTTTCCAATCACCTCATGCTTCATTAAGAAAGCTATCACTGGGTTCTGTTAATCAATACATTATGTTGATGCCTTCTGCCTTATATATATCCATGGATCAATATCTTCAAGGTCTGTTTATTCTTGCAAATGACCCTACTGCAGATGTGCGGAAGTTGGTTTGTGCAGCATTTGTTCAGCTGATTGAAGTCCGTCCGTCTGTCTTGGAGCCACATCTAAGGAATGTGATTGAATATATGTTACAAGTCAACAAGGACCCAGATGAAGAAGTGGCTCTTGAATCCTGTGAATTTTGGTCTGCATATTGTGATGCTCAAATGCCACCTGAAAACTTGAGAGAATTTTTGCCTCGTCTTATTCCGATATTGTTGTCAAACATGGCTTATGCAGATGATGATGAATCGCTTATTGAAGCTGAGGAAGAGGGTTCTCAACCTGATCGAGATCAGGATCTAAAACCTCGATTTCATGTATCAAGGTTTCATGGATCAGATGAAGTAGAAGATGATGATGACGATGTTGTTAATACATGGAATTTACGGAAATGTAGTGCAGCTGCTCTAGATATTCTCTCGAACGTGTTTGGAGATGAGATACTTCCTACTCTGATGCCTATTGTTCAGGCCAAGTTGTCAACTGTCGGAGATGATGGCTGGAAAGAAAGGGAAGCTGCTGTCTTGGCACTTGGTGCCATCGGCGAGGGTTGCATCAATGGTCTTTATCCTCATCTGCCAGAGATTGTGGCATTTCTTATCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACAGTATCTCGGTTTAGCAAATTTATTATTCAGGGTATCGGGCATGCCAAGGGTTATGAACAATTTGATAGCGTTCTTATGGGTCTTCTTCGAAGAATTTTGGATGATAATAAGCGTGTACAAGAGGCTGCTTGTTCAGCTTTTGCAACTCTGGAAGAGGAGGCTGCTGAAGAGCTGTCACCACGCTTGGAAATCATATTAAAGCACCTGATGGTTGCATTTGGGAAATATCAGAGGCGAAATCTCAGAATTGTGTATGATGCTGTTGGAACTCTAGCTGAAGCTGTTGGGGGAGAGCTGAATCAGCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTCTTTCCCCTCCTAGAATGCTTCACATCTATAGCACATGCACTGGGTACTGGATTCACTCCATTTGCTGAACCTGTATTTAGGAGGTGCATAAATATAATTCAGACCCAACAATTGGCTAAGGCCAATCCTGCTGCGGCTGGGTCTCAGTATGACAAGGAATTCATTGTATGCTCTCTTGATCTACTTTCTGGACTAGCAGAAGGTCTTGGCAGTGGAGTAGAGAGTTTGGTTTCACAGTGTTCTTTGAGGGACTTACTTTTGCATTGTTGTACGGATGATGCTCCCGATGTTCGACAAAGTGCCTTTGCCTTACTTGGAGACCTTGCTCGAGAAACATTCCATAAGCCGATCCTTCTTAATGCATGTTTGAAAGTGAATTGGGTGTGTGTGGTTCATTTGCACCCTCGCTTGTCTGAGATTCTTGAACTTGCTGCCAAACAACTGGAAATTTCTAAGGTACATGCAGCTATTTCAGTAGCAAATAATGCATGCTGGGCGATTGGAGAATTAGCAGTTAAGGTTCGTCAAGAGATTTCTCCGTTCGTTTTAAGTGTAATTTCATGCTTGGTACCAATTCTTCAGCATGCAGAGGGACTCAACAAGTCACTTATAGAAAATAGTGCAATAACACTGGGGAGGCTTGCATGGGTCTGTCCAGACCTTGTATCACCACATATGGAGCATTTCATGCAACCTTGGTGCACTGCTCTTTCAATGATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCCATGGTCAAAGCCAATCCTTCTGGAGCTCTAAGTTCGCTGGTTTACATGTGTAAAGCCATTGCAAGTTGGCATGAAATAAGGAGTGAAGATTTACACAATGAAGTCTGCCAGGTCTTGCATGGATATAAACAGATGCTGCGCAATGGAGCATGGGACCAGTGCATGTCTGCTTTGGAGCCACCAATAAAAGAAAAGCTTTCAAAATATCAAGTATAA 2733 0.4233 MAAATTPSWQPQEQGFKEICALLEQQISHSSSADKSQIWNQIQQYSNLPDFNNYLVFIFTRAQGISVEVRQAAGLYLKNNMKNVYNLMQPEYQKYVKSELLPCLGAADKHIRSTTGTIISVVVQTGGISQWPELLQALVNCLDSSDLNHMEGAMDALSKICEDVPQILDSDIPGLAERPINIFLPRLFRFFQSPHASLRKLSLGSVNQYIMLMPSALYISMDQYLQGLFILANDPTADVRKLVCAAFVQLIEVRPSVLEPHLRNVIEYMLQVNKDPDEEVALESCEFWSAYCDAQMPPENLREFLPRLIPILLSNMAYADDDESLIEAEEEGSQPDRDQDLKPRFHVSRFHGSDEVEDDDDDVVNTWNLRKCSAAALDILSNVFGDEILPTLMPIVQAKLSTVGDDGWKEREAAVLALGAIGEGCINGLYPHLPEIVAFLIPLLDDKFPLIRSISCWTVSRFSKFIIQGIGHAKGYEQFDSVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELSPRLEIILKHLMVAFGKYQRRNLRIVYDAVGTLAEAVGGELNQPVYLDILMPPLIEKWQQLSNSDKDLFPLLECFTSIAHALGTGFTPFAEPVFRRCINIIQTQQLAKANPAAAGSQYDKEFIVCSLDLLSGLAEGLGSGVESLVSQCSLRDLLLHCCTDDAPDVRQSAFALLGDLARETFHKPILLNACLKVNWVCVVHLHPRLSEILELAAKQLEISKVHAAISVANNACWAIGELAVKVRQEISPFVLSVISCLVPILQHAEGLNKSLIENSAITLGRLAWVCPDLVSPHMEHFMQPWCTALSMIRDDVEKEDAFRGLCAMVKANPSGALSSLVYMCKAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06177 910 ProSiteProfiles Importin-beta N-terminal domain profile. 38 106 IPR001494 GO:0006886|GO:0031267
Trre1g06177 910 SUPERFAMILY ARM repeat 9 900 IPR016024 -
Trre1g06177 910 Pfam Importin-beta N-terminal domain 39 105 IPR001494 GO:0006886|GO:0031267
Trre1g06177 910 FunFam Transportin-1 6 910 - -
Trre1g06177 910 Pfam HEAT-like repeat 408 461 - -
Trre1g06177 910 Gene3D - 6 910 IPR011989 -
Trre1g06177 910 Pfam HEAT repeat 668 694 IPR000357 GO:0005515
Trre1g06177 910 PANTHER IMPORTIN BETA 19 886 IPR040122 GO:0006606
Trre1g06177 910 SMART IBN_N_2 38 106 IPR001494 GO:0006886|GO:0031267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06177 Trre-Chr1 65567227 65578555 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06177 K18752 - gmx:100792702 1616.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06177 1 65567227 65578555 Trre1g06177 1 65567227 65578555 ECH