Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06168 ATGGCGTTTTGGCATCGAATCGAAAAATCTAAGCTCAAAACAGCTTACTTCCAATTTCGTAGATGTTACACTAACCTTAATCATGCTTCTTTCTCGAATTCTACTCCTATAACTCGTCCTATGGTGATGCCAAATCCTTATTCGCTTTTCCATCACAGACCCACAAATTTTCTTAATAGTGTTAGGTTTTATGCTGTTCCTGTTCAGTTTCAGGTAAAGCCTAAGAATGAGGATGATGACATAGATGGGCCACGGTTGAATGATCAGGTCAAAGCTAGATATGTCAGGCTAGTGAGGGATGATGGAGAACACTCAGTGGTGTCAAGGTTTGAAGCACTGGAACGTGCCAAGACGCTTAAACTTGATTTAGTTGAGGTTGATAGAATGGCTAATCCACCTGTTTGTAAAATCATGGACTACCACAAAGAAATGTACAAGAAGAAAGAAAGTAACAAGGAGCGTGCTAAAAGCAAGTCTGAGATGACACTGCGAAAGGATGTTAAGGAAGTACGATTTTCTGAAAAAACCGAATCAAAAGACCTTAAGATGAAATCAGATTTGGTTAGAAAGCAAATGGAGAAGGGTTATCGGGTGAAGGTTAAGGCAACAGGCAACGCAGATGAAGCCATGTTAGACGCAATATCTCGTCTTTCGGCTCTGATAGAAGATGTTTGTGTTGTGGAAAGTGGACCACATTTGACCAAAAAAGAAGCTTATATAGTAGTAAGACATATTAAATATGGACCAGCTAAGAAAGGTGCGAAAAAATCAAAAGATGCCGCACAATTGGATGCGAAGGCCGAGGAAGGTGATGTGGAACCATTAACTACCAATACTAGTGATTCAGAATTTCCATTCTCACCAAATAGACCAGAGAAAAGTATCAACAACGGGAATGATCCAGAATCTCTACCTGTGCTAGAAAATAGGTATACAAAAGTTAATCATCGTGTCGAGAACAAGGTTCAACCTACTGCGCAAGTGCCTCCTGCTGTGGTCGAGAATAGGTACATAAAAGCTGAGCCAAGAAACAGGTTCCAACAATCTAATGCGCAAGTGCCTCCTGCTGTGGTCGAGAATAGATACATAAAAGCTGAGCCAAGAAACAGGTTCCAACAACCAACGCCGAATACAGGTCCAGGGCCAGGGCCAAGAGATGCAAACAGGTGGACACCCCCGAATTTGAATCAACCAAGACATGCACCAGTAGATATTAATTTTAATCCCAATATCAATAGTCCTCCTGGATCAAGAAACTCGATGCCTTCCCGTGACGACATCAATAAGAATCCTAGAAGTCCGAATACAACTCGAGGTCCGAATACAACAAGTCCTGGCTACGGCATTTTTAGTAGGGATGCATAG 1365 0.4176 MAFWHRIEKSKLKTAYFQFRRCYTNLNHASFSNSTPITRPMVMPNPYSLFHHRPTNFLNSVRFYAVPVQFQVKPKNEDDDIDGPRLNDQVKARYVRLVRDDGEHSVVSRFEALERAKTLKLDLVEVDRMANPPVCKIMDYHKEMYKKKESNKERAKSKSEMTLRKDVKEVRFSEKTESKDLKMKSDLVRKQMEKGYRVKVKATGNADEAMLDAISRLSALIEDVCVVESGPHLTKKEAYIVVRHIKYGPAKKGAKKSKDAAQLDAKAEEGDVEPLTTNTSDSEFPFSPNRPEKSINNGNDPESLPVLENRYTKVNHRVENKVQPTAQVPPAVVENRYIKAEPRNRFQQSNAQVPPAVVENRYIKAEPRNRFQQPTPNTGPGPGPRDANRWTPPNLNQPRHAPVDINFNPNINSPPGSRNSMPSRDDINKNPRSPNTTRGPNTTSPGYGIFSRDA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06168 454 PANTHER TRANSLATION INITIATION FACTOR IF-3 6 282 IPR001288 GO:0003743|GO:0006413
Trre1g06168 454 MobiDBLite consensus disorder prediction 365 454 - -
Trre1g06168 454 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 83 156 IPR036787 GO:0003743|GO:0006413
Trre1g06168 454 MobiDBLite consensus disorder prediction 252 271 - -
Trre1g06168 454 MobiDBLite consensus disorder prediction 251 305 - -
Trre1g06168 454 Pfam Translation initiation factor IF-3, N-terminal domain 86 153 IPR019814 GO:0003743|GO:0006413
Trre1g06168 454 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 166 246 IPR036788 GO:0006413
Trre1g06168 454 Gene3D - 163 250 IPR036788 GO:0006413
Trre1g06168 454 MobiDBLite consensus disorder prediction 390 448 - -
Trre1g06168 454 Gene3D - 79 154 IPR036787 GO:0003743|GO:0006413
Trre1g06168 454 MobiDBLite consensus disorder prediction 273 303 - -
Trre1g06168 454 NCBIfam translation initiation factor IF-3 84 242 IPR001288 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06168 Trre-Chr1 65503416 65508379 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06168 K02520 - gmx:100808433 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06168 1 65503416 65508379 Trre1g06168 1 65503416 65508379 ECH