Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06163 ATGGAAGAAGATGTTGTGATTGTGGGAGCTGGAATTGCTGGCCTTACTACAGCCTTAGGACTTCACAGGTTAGGTGTAAAAAGTTTGGTATTGGAATCTTGGGATAGTTTGAGAGTAACTGGATTTGGTTTAGCAATATGGGAAAATGCTTGGAAGGCTTTGGATGCTCTTGGTGTTGGAGATATACTTCGCCACAGACATATACATATTTCTGGGAATGTGACTACTTCTTTTAGGGACAAAGGAAAGCTTAAACAATATTGTGTTAGAAGAAAATTATTGTTGGAAGGCCTTGCCAATGAGCTTCCTAGTGGTACCATTAGGTACTTATCAAAAGTTGTTGCTCTTGAGGAATCTGACTTCTCTAAGGTAGTTCATCTTGCTGATGGAACAACCATCAAAACCAAGGTGTTGATAGGGTGTGATGGAGTGAACTCTATGGTGGCAAAGTGGTTAGGATTTAAGGAAGCAACTTATACAGGGAGATATGGAATCAGGGGTTGTGCAGAGTTGGAAAACAATCACAATTTTGAACCTGTGCATATGCGGTTCTTTGGCAACGGTTTTAGAGCTCTAGTTGTTCCATGTGATGAAAAGACTGTTTACTGGTATTTTACTTGGACTTCTACCATCCAAGATAAAGAGTTAATTGAGAAGAACCCTGCTGAACTAAAACAATATGTGTTAAACAAGTTAGAGAAGATGCCAAGTGATGTTAAATATTTCATAGAAAAAACTGAGTTACATGCATTTCAATTAGCTTCATTCAGATACAGACATCCTTGGGAGCTTATAATGAGAAATATTAGTAAAGGTAATGTTTGTGTTGCTGGAGATGCTTTCCACCCTATGACACCTGATATTGGTCAAGGGGGGTGTTGTGCTTTAGAGGATGGGGTGGTTTTAGCAAGGTGTCTATCTGAGGCTTTTTCTAAAAAGCCAATGGAAGAAGAGGAACAATACAAAAGAATTGAGGAAGGATTGAAGAAATATGCAAATGAAAGAAGATGGAGATGTATTGATCTTATTACTACATCTTATATTATTGGTTTTATACTTTTATTCAGCAGGGTAATTCAAAATTGA 1086 0.3775 MEEDVVIVGAGIAGLTTALGLHRLGVKSLVLESWDSLRVTGFGLAIWENAWKALDALGVGDILRHRHIHISGNVTTSFRDKGKLKQYCVRRKLLLEGLANELPSGTIRYLSKVVALEESDFSKVVHLADGTTIKTKVLIGCDGVNSMVAKWLGFKEATYTGRYGIRGCAELENNHNFEPVHMRFFGNGFRALVVPCDEKTVYWYFTWTSTIQDKELIEKNPAELKQYVLNKLEKMPSDVKYFIEKTELHAFQLASFRYRHPWELIMRNISKGNVCVAGDAFHPMTPDIGQGGCCALEDGVVLARCLSEAFSKKPMEEEEQYKRIEEGLKKYANERRWRCIDLITTSYIIGFILLFSRVIQN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06163 361 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 - -
Trre1g06163 361 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 134 149 - -
Trre1g06163 361 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 302 - -
Trre1g06163 361 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 271 286 - -
Trre1g06163 361 Gene3D - 4 353 IPR036188 -
Trre1g06163 361 Pfam FAD binding domain 4 311 IPR002938 GO:0071949
Trre1g06163 361 SUPERFAMILY FAD/NAD(P)-binding domain 4 353 IPR036188 -
Trre1g06163 361 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 3 352 IPR044560 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06163 Trre-Chr1 65485581 65488448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06163 3 352 Miscellaneous Gene Families AT5G05320 52.459 9.37e-134 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06163 - - tpra:123902776 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06163 1 65485581 65488448 Trre1g06163 1 65485581 65488448 ECH