Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06162 ATGGAAAGTGTAATTGAAGAAGATATTGTGATTGTGGGAGCTGGAATTGCTGGTCTTACAACATCCTTGGGACTTCATAGATTGGGCTTTAGAAGTTTGGTATTAGAATCTTGTGATAGTTTGAGAGTTAGTGGATTTGCTTTAACATTATGGGAAAATGCTTGGAAAGCCTTGGATGCTATTGGTATTGGAGACATCCTTCGCCACCAACATCTACAACTTCATGGGATTGTCACTACTTCTTTGATCACCGGACAACAAACATCAACTATATCTTTTGAGGACAACAAAAGAAAGTATGAAGTTCGCCGTGTTAGGAGGCAGTTATTGTTGGAAGCCCTTGCCAATGAGCTTCCAAGTGGAACCATTAAGTACTTGTCAAAGGTTGTTGCTATTGAGGAATCTGGTTTCTTTAAGATACTACATCTTTCTGATGGAACAACAATCAAAACTAAGGTATTGATCGGGTGTGATGGAGTAAACTCTATGGTGGCAAAGTGGCTAGGCTTTAAAGAGGCCTCTTACACAGGAAGACATGCAACCAGGGGTTATGTAGAGTTGAAGAACCCTCACCAAATCGAGCCAATGTTCATGCAGTACTTTGGCAATGGTTTTAGAGCTGGAGCTATTCCATGTGATGAGAAGATTGTTTATTGGTTTTTCACATGGGCTCCCATCAGCCAAGATAAAGAGCTAGCACCAGATCCTACTAAACTAAAAGATTATGTGTTAAGCAATCTAGAGAAGATGCCAAGTGATGTTAGATCTTTCATAGAAAAAACTGAATTAAATGCATTTCAATCAACTCCATTGAGATATAGACATCCTTGGGAGCTTATAATGGGAAATATTAGTAAAAGCAATGTTTGTATTGCTGGAGATGCTTTACACCCTATGACACCTGATCTTGGCCAAGGGGGGTGCTGTGCTTTAGAGGATGGGGTGGTTTTAGCAAGGTGCCTAGCTGAGGCCTTTTCCAAAAAACCAAATGAAGAAAAAGAAGAATATAAAAGGATTGAGAAAAGTTTGAAGAAATATGCAAAGGAGAGAAGATGGAGATGCATTGATCTCATTACTACAGCTTATATTATTGGTTTCATTCAACAAAGTGGTTCTAAATTTGTTAGCTTTATTAGGGAGACAATTTTGGCTACATTGTTAGGTATTCAATTGTTAAAGAAGTCAGATTTTAATTGTGGACAACTAAAATAG 1212 0.3828 MESVIEEDIVIVGAGIAGLTTSLGLHRLGFRSLVLESCDSLRVSGFALTLWENAWKALDAIGIGDILRHQHLQLHGIVTTSLITGQQTSTISFEDNKRKYEVRRVRRQLLLEALANELPSGTIKYLSKVVAIEESGFFKILHLSDGTTIKTKVLIGCDGVNSMVAKWLGFKEASYTGRHATRGYVELKNPHQIEPMFMQYFGNGFRAGAIPCDEKIVYWFFTWAPISQDKELAPDPTKLKDYVLSNLEKMPSDVRSFIEKTELNAFQSTPLRYRHPWELIMGNISKSNVCIAGDALHPMTPDLGQGGCCALEDGVVLARCLAEAFSKKPNEEKEEYKRIEKSLKKYAKERRWRCIDLITTAYIIGFIQQSGSKFVSFIRETILATLLGIQLLKKSDFNCGQLK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06162 403 Pfam FAD binding domain 8 327 IPR002938 GO:0071949
Trre1g06162 403 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 - -
Trre1g06162 403 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 - -
Trre1g06162 403 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 - -
Trre1g06162 403 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 - -
Trre1g06162 403 Gene3D - 8 378 IPR036188 -
Trre1g06162 403 SUPERFAMILY FAD/NAD(P)-binding domain 8 391 IPR036188 -
Trre1g06162 403 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 7 402 IPR044560 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06162 Trre-Chr1 65476749 65478749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06162 1 402 Miscellaneous Gene Families AT5G05320 51.351 7.40e-151 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06162 - - tpra:123902776 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06162 1 65476749 65478749 Trre1g06162 1 65476749 65478749 ECH