Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06159 ATGGAAGTTCAACAGCATGATACACTTTCTGGAAACAATGAGGCTGAGCCCAATGGAGTTTCTTGTAACAAAAGTAATGCCGTGCAAATTTATAGACGAGATGTTGTGAAGAATAAAAACAGTGGGATGATTGGGATTGTGACGGAATTTAACGGTGCTTCTGTGCATGGTAACACTGCTGCTCTTCAGACTAACGAGCTATGTGTAAACTGGATTGATGGATCTGTATCCACACAGAATTTCAGTGATGTTGAGGTTATTGATCGCGGATTTTTACATGGTGATTTTGTAGCTGCTGCCTCTGATCCTACTGGGCAAGTGGGTGTTGTGGTTGATGTCAATATATCTGTGGATTTGTCGGCCTACCATGATGGATCTATTGTAAAAGATGTCTCATCAAATGGCTTAAAGCGTATTAGGGATTTCATTGTTGGTGATTATGTGGTGCTCGGGTCTTGGTTAGGAAGAATTGATGATGTTTGGGATAATGTGACTGTCTTATTTGATGATGGTTCAGTTTGTACAGTCTCCAATGCAGATCCAATGAATCTTAAACCGATTTCAAAGGATATTCAAGAAGATGTGTATTTCCATTATTATCCAGGGCTACGTGTAAGGGCCAATTCTTCATCAATGTTCGAGATGGCTAGGTGGTTTTGTGGTTCGCAGAAAGCAAATAGGTTAGAAGGTATTGTCACCAATGTTACAGTGGGATCAGTGTTCGTTTATTGGATAGCATCTGCAGGTTATGGGCCATATTCTTCTACTCCCCCGGCTGAGGAACAGAATCCGAAAAACTTAAAAATTTTGTCTTGTTTTGCTCATGCAAACTGGAAATTGGGTGACTGGTGTCTTTTACCCTCATCTGCACTGTCATCTTCTGTTTCCATCAACAAGAGCAAATCAAAATTGGAACGTAACAATTCTATCTCAGTATCAAAGGATCCTGTCCATGAAGCTTGGAAAGAAAAGAGAGCTCGGAAGAAAGAGGAAAACTTTGTCATTTTCAACATCAGGACAAGAGTTGATGTTGAATGGCAGGATGGAACAATAGAGCGTGAACTAGATTCTACGAGTTTAATTCCTATTGATAATCCTTGTGATCATGAATTTTTTTCAGAACAATATGTTATGAAGAAGAATTCTGATGTTGGTGAGGATAATAGCGAAACTAGCCGAGTTGGGGTGCTGAGGAGTGTTAATGCCAAAGAGCGGACAGCTTGTGTGAGGTGGATAAAACCAGCTGCCAGGGCAGATGATCCCCGAGAATTTGACAAGGAGGAAATTGTAAGTGTCTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTTCGGGGACGTGGTTTTTAGACAACCATCTGTGACTGTCTGTTCAGAAGCTTCTGTTGGAGAGTCCATTGAGAAATCGAAGCAGGAAAATGAAGAATGCAGACTTAAAAATGACGCAGGAAACCAAACAGAAAGTGCATCTGCTGGTGAAACGGATGTGGAGTTCTCAGACCTCTCCTGGGTTGGAAATATTATTGGCCTTAAGAATGGTGACATTGAAGTTATTTGGGCTGATGGGATGGTATCAACGGTTGGCCCCCAAGCAATCTATATGGTTAGTAGAAATTATGATGATTCAGATGCTGCATGGAGCGATATAAGTGATGCTGCAAGCCGGGAAGACTTTGGTAGGACCACCGCTCTTTCTGTCCCACTAGCAGCCCTTCGATTCGTTACCAGACTTGCCTTTGGAATATTCTCCAGCGGACAAATGAATTTAGATCCTGTTCACACACAGTCAAATGATGAAATTGTATGTCCATCACCGGTTAATGTTTGCGAGTCCAGTTCTCAGGAATGCATTGCTCCTGCAAGTTGCAACAATGATGCTTGCAGTTTGAAACATTTTGACATGGTTACAGATCCGTCAGACCATTATTATATTGGTGCAAGTGGACAGAGAAACAACCGAAAATGGTTTAAGAAGGTGCAACAAGATTGGGGCATACTACAAAATAACCTTCCTGAGGAAATCTTTGTACGGGTCTATGAAGATAGAATGGATCTTGTGAGGGCAGTTATTGTAGGGCCATTTGGGACCCCTTACCAAGATGGGCTGTTTTTCTTTGATTTTCACCTTCCGCCAGAGTATCCTGATGTTCCACCGTCAGTGTACTATGATTCAGGCGGTTGGCGTATTAACCCTAATTTGTACGAGGATGGGACGGTTTGCCTTAGCCTTCTAAATACATGGACAGGCAGAGGAAATGAAGTATGGGATTCAAAATCATCTAGCATCCTTCAAGTTCTAGTTTCACTACAAGGGCTAGTACTCAACTCCAAGCCTTACTTTAATGAACCTGGATATGATAAGCAGACTGGAACAGCTGAAGGAGAGAAAAATTCATTGTCATACAACGAGAATATATTTTTACTGAACTGCAAGACCATGATGTATCTTATGCGGAAACCCCCCAAGGATTTCGAAGTGCTCATCAAAGAACACTTTAAGAGACGTGGTCGTTACATCCTTAAGGCTTGTGATGCATATATGAAAGGTTACTTGATTGGCTCATTGAACAGAGATGCCTCCGTGAGTAATAATAGCAGTCCGAATTCTAACTCAGTTGGTTTCAAGTTGATGTTAGCCAAGATAGTGCCAAAGCTTTTCTTGTTATTGAGTGAGGTTGGAGCTGATTGTGAGCAATTTAAGCATTTGAAAGAGAGGAATTGA 2724 0.4156 MEVQQHDTLSGNNEAEPNGVSCNKSNAVQIYRRDVVKNKNSGMIGIVTEFNGASVHGNTAALQTNELCVNWIDGSVSTQNFSDVEVIDRGFLHGDFVAAASDPTGQVGVVVDVNISVDLSAYHDGSIVKDVSSNGLKRIRDFIVGDYVVLGSWLGRIDDVWDNVTVLFDDGSVCTVSNADPMNLKPISKDIQEDVYFHYYPGLRVRANSSSMFEMARWFCGSQKANRLEGIVTNVTVGSVFVYWIASAGYGPYSSTPPAEEQNPKNLKILSCFAHANWKLGDWCLLPSSALSSSVSINKSKSKLERNNSISVSKDPVHEAWKEKRARKKEENFVIFNIRTRVDVEWQDGTIERELDSTSLIPIDNPCDHEFFSEQYVMKKNSDVGEDNSETSRVGVLRSVNAKERTACVRWIKPAARADDPREFDKEEIVSVYELEGHPDYDYCFGDVVFRQPSVTVCSEASVGESIEKSKQENEECRLKNDAGNQTESASAGETDVEFSDLSWVGNIIGLKNGDIEVIWADGMVSTVGPQAIYMVSRNYDDSDAAWSDISDAASREDFGRTTALSVPLAALRFVTRLAFGIFSSGQMNLDPVHTQSNDEIVCPSPVNVCESSSQECIAPASCNNDACSLKHFDMVTDPSDHYYIGASGQRNNRKWFKKVQQDWGILQNNLPEEIFVRVYEDRMDLVRAVIVGPFGTPYQDGLFFFDFHLPPEYPDVPPSVYYDSGGWRINPNLYEDGTVCLSLLNTWTGRGNEVWDSKSSSILQVLVSLQGLVLNSKPYFNEPGYDKQTGTAEGEKNSLSYNENIFLLNCKTMMYLMRKPPKDFEVLIKEHFKRRGRYILKACDAYMKGYLIGSLNRDASVSNNSSPNSNSVGFKLMLAKIVPKLFLLLSEVGADCEQFKHLKERN 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06159 907 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 64 897 - -
Trre1g06159 907 Gene3D Ubiquitin Conjugating Enzyme 624 889 IPR016135 -
Trre1g06159 907 FunFam Probable ubiquitin-conjugating enzyme E2 23 621 894 - -
Trre1g06159 907 Pfam Ubiquitin-conjugating enzyme 663 805 IPR000608 -
Trre1g06159 907 SUPERFAMILY UBC-like 637 822 IPR016135 -
Trre1g06159 907 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g06159 907 CDD UBCc 658 808 IPR000608 -
Trre1g06159 907 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 655 815 IPR000608 -
Trre1g06159 907 MobiDBLite consensus disorder prediction 462 494 - -
Trre1g06159 907 MobiDBLite consensus disorder prediction 466 482 - -
Trre1g06159 907 SMART ubc_7 658 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06159 Trre-Chr1 65460331 65464383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06159 87 899 Miscellaneous Gene Families AT2G33770 38.557 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06159 K10581 - qsu:111988776 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06159 1 65460331 65464383 Trre1g06159 1 65460331 65464383 ECH